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rm deprecated action and bash scripts #2092

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wants to merge 1,075 commits into from
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rm deprecated action and bash scripts #2092

wants to merge 1,075 commits into from
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Commits on Feb 15, 2024

  1. remove external references to _source_dataset_column_name_is_required

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  2. source_dataset_column_name logic -> column_info_settings

    @ADBond
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  3. correct new references

    @ADBond
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  4. unique id -> column info settings

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  5. copy mutable in InputColumn

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  6. get sql_dialect from column_info_settings if we can/need

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  7. settings mostly keyword only

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  8. make sure lambda updates properly in em training

    @ADBond
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  9. lint with black

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  10. Merge branch 'splink4_dev' into splink4_examples_notebooks

    @RobinL
    RobinL committed Feb 15, 2024
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  11. Merge branch 'master' into merge_master

    @RobinL
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  12. fix changes lost in merge

    @RobinL
    RobinL committed Feb 15, 2024
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  13. fix changes lost in merge

    @RobinL
    RobinL committed Feb 15, 2024
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  14. restore splink4 deps

    @RobinL
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  15. update deps to include igraph

    @RobinL
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  16. update lockfile

    @RobinL
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  17. update toml

    @RobinL
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  18. update lockfile

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  19. absolute date time difference functions now allow string parsing

    @RobinL
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  20. more rigour over column types for date time functions

    @RobinL
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  21. format

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Commits on Feb 16, 2024

  1. update some of the tests

    @RobinL
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  2. more tests pass

    @RobinL
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  3. remove duplicate code

    @ADBond
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  4. simple test to catch branch

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  5. Merge pull request #1972 from moj-analytical-services/merge_master 

    Merge master into splink4_dev
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Commits on Feb 21, 2024

  1. Merge pull request #1967 from moj-analytical-services/settings-splitting 

    Settings object - splitting attributes
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  2. compute_new_parameters_sql takes a bit less

    @ADBond
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  3. hints and breaking down parameters

    @ADBond
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  4. split out core model settings (but still wired up)

    @ADBond
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  5. remove Comparison handling of level as dict

    @ADBond
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  6. delete unneeded dialect hack

    @ADBond
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  7. more type hinting

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  8. retain_*_columns injected into Comparison when needed

    @ADBond
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  9. unpick last reference to Settings from Comparison

    @ADBond
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  10. fix settings ref

    @ADBond
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  11. get rid of unneeded settings injection

    @ADBond
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  12. keep history only of key bits

    @ADBond
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  13. cut double assignment

    @ADBond
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  14. sql function only knows about columns - pull from settings before cal… 

    …ling
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  15. lint with black

    @ADBond
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  16. limit access to settings object

    @ADBond
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  17. directly access core model settings

    @ADBond
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Commits on Feb 22, 2024

  1. inject Comparison info into ComparisonLevel rather than reading

    @ADBond
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  2. move training warnings out of comparison level

    @ADBond
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  3. remove last references of comparison in comparison_level - inject eve… 

    …rything we need, when we need
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  4. Merge pull request #1991 from moj-analytical-services/decomparison-co… 

    …mparisonlevel

De-Comparison ComparisonLevel
    @ADBond
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  5. fix reference

    @ADBond
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  6. get rid of custom deepcopy we no longer need

    @ADBond
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  7. +annotation

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Commits on Feb 26, 2024

  1. update DateComparison tests

    @RobinL
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  2. bump version to make sure don't accidentally publish wrong version

    @RobinL
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  3. Merge branch 'splink4_dev' into consistency_in_date_parsing

    @RobinL
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  4. update dependencies to include igraph

    @RobinL
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  5. em training - maximisation returns updated parameters

    @ADBond
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  6. progress

    @RobinL
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  7. more tests passing

    @RobinL
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  8. remove test that's no longer relevant and update deps

    @RobinL
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  9. Merge branch 'splink4_dev' into merge/splink_3_to_4

    @ADBond
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  10. ensure date comparison usable in postgres

    @RobinL
    RobinL committed Feb 26, 2024
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  11. add back description

    @RobinL
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  12. remove unnecessary comment

    @RobinL
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  13. restore splink4 fix

    @ADBond
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  14. make input is string a required arg

    @RobinL
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  15. remove linker access, store db_api directly on em_training_session

    @ADBond
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  16. add keyword arg

    @RobinL
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  17. Merge remote-tracking branch 'origin/master' into merge/splink_3_to_4

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  18. simplify column select logic slightly

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Commits on Feb 28, 2024

  1. freeze ColumnInfoSettings

    @ADBond
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  2. restructure logic to make it clear what we keep when

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  3. predict_from_comparison_vectors_sqls - explicit args, and a settings … 

    …version

letting this predict sql be directly configurable allows us to call it without constructing a `Settings` if we wish. There is a convenience wrapper using settings which replicates old functionality, which we still use outside of training for the time being
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  4. self-link predict using minimal interface

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  5. get rid of training_mode setting

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  6. move max change logic to expectation_maximisation_module, and return … 

    …full cm_settings history
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  7. em function takes parameters not training session object

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  8. pass only relevant bits of settings to EM

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Commits on Feb 29, 2024

  1. method -> function and clarify arguments

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  2. allow cvv select function to have values injected

    @ADBond
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  3. lint with black

    @ADBond
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  4. training_settings on EMTrainingSession

    @ADBond
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  5. remove custom settings deepcopying

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  6. em training using db api directly - partially

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  7. allow seeding of EM training

    @ADBond
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  8. allow passing of blocking rules to sql function

    @ADBond
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  9. ouptut_column_name -> Comparison on CoreModelSettings

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Commits on Mar 1, 2024

  1. training returns CoreModelSettings rather than directly mutating link… 

    …er version
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  2. don't store full settings on EMTrainingSession

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  3. get of training blocking rule as a settings entity

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  4. stop estimate_without_term_frequencies living on settings, and freeze… 

    … TrainingSettings
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  5. pass everything we need from linker to EMTrainingSession additionally 

    We still pass linker for now as we need it for concat_with_tf and blocking, but once those are sorted we can factor linker out easily
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  6. switch from bools to set containing fixed prob types

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  7. couple of tidies

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Commits on Mar 2, 2024

  1. Merge branch 'splink4_dev' into splink4_examples_notebooks

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  2. Merge branch 'consistency_in_date_parsing' into splink4_examples_note… 

    …books
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  3. update to use new date function

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  4. update to use new date functions

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  5. update to use new date functions

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  6. update to use new date functions

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  7. update to use SettingsCreator

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  8. update to SettingsCreator

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  9. update to SettingsCreator

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  10. update to SettingsCreator

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  11. update to SettingsCreator

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  12. update to SettingsCreator

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  13. update to SettingsCreator

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  14. update to SettingsCreator

    @RobinL
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  15. update to SettingsCreator

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  16. update to SettingsCreator

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  17. update to SettingsCreator

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  18. update to SettingsCreator

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  19. update to SettingsCreator

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Commits on Mar 4, 2024

  1. Merge pull request #1976 from moj-analytical-services/consistency_in_… 

    …date_parsing

(Splink4) Consistency in date levels and date typing/parsing
    @RobinL
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  2. Merge branch 'splink4_dev' into merge/splink_3_to_4_frozen

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Commits on Mar 6, 2024

  1. Merge branch 'splink4_dev' into em-training-split

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  2. Merge pull request #1983 from moj-analytical-services/em-training-split 

    EM training - decoupling and reducing mutable state
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  3. Merge branch 'splink4_dev' into merge/splink_3_to_4_frozen

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  4. Merge pull request #2008 from moj-analytical-services/merge/splink_3_… 

    …to_4_frozen

[MERGE] Splink 3 -> 4
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  5. Merge branch 'merge/splink_3_to_4' into merge_resolution

    @RobinL
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  6. migrate tests to splink4

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  7. fix tests

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  8. fix tests

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  9. fix tests

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  10. Merge pull request #2032 from moj-analytical-services/merge_resolution 

    Merge splink3->4
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  11. Merge branch 'splink4_dev' into splink4_examples_notebooks

    @RobinL
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  12. tutorial intro

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Commits on Mar 7, 2024

  1. split db api into backend specific files

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  2. remove code from previous database api module

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Commits on Mar 8, 2024

  1. rename imports to import from new modules

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  2. lint with black

    @RobinL
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  3. fix tets

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  4. fix imports

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  5. demos

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  6. Merge pull request #1961 from moj-analytical-services/splink4_example… 

    …s_notebooks

Splink4 examples notebooks
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  7. properly move methods to db-api (as-is), and reroute debug_mode

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  8. cache execute queries where we execute

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  9. farm out some details to a separate method

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  10. reset pipeline commonally, let failures just happen

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  11. cleaning pipeline

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  12. delete unneeded code

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  13. switching some public/private

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  14. get rid of unneeded argument

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  15. all duckdb execution via api

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  16. spark executing via api

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  17. postgres all going through run_sql_execution

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  18. delete table public

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  19. format

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  20. rename method + make private

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Commits on Mar 11, 2024

  1. Merge branch 'splink4_dev' into split_out_db_api

    @RobinL
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  2. update imports

    @RobinL
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Commits on Mar 12, 2024

  1. run all ipynbs in exampels

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  2. run all ipynbs in tutorials

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  3. spark example

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  4. sqlite example

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  5. Merge pull request #2038 from moj-analytical-services/split_out_db_api 

    Split out db api
    @RobinL
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  6. Merge branch 'splink4_dev' into merge_3_to_4_2041

    @RobinL
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  7. update colab links

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  8. Merge pull request #2047 from moj-analytical-services/colab_links 

    Colab links
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  9. fix urls

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  10. Merge pull request #2049 from moj-analytical-services/fix_colab_urls_2 

    fix urls
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  11. Merge branch 'splink4_dev' into db-api-tidy

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  12. Merge pull request #2046 from moj-analytical-services/merge_3_to_4_2041 

    Merge 3 to 4 2041
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  13. Merge branch 'splink4_dev' into db-api-tidy

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  14. move commonly used methods to init

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Commits on Mar 13, 2024

  1. improve

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  2. improve

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  3. explain why using getattr

    @RobinL
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  4. update tutorials

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  5. up to febrl

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  6. all duckdb examples done

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  7. spark and sqlite examples

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  8. fix lint

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  9. rename execute_sql_pipeline in line with other method names

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  10. rename method to clarify now name is available

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  11. rename internal method in fashion consistent with other methods

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  12. lint with black

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Commits on Mar 14, 2024

  1. Merge pull request #2052 from moj-analytical-services/move_common_met… 

    …hods_to_init

Move commonly used methods to init
    @RobinL
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  2. Merge branch 'splink4_dev' into db-api-tidy

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  3. Merge pull request #2050 from moj-analytical-services/db-api-tidy 

    DB-API tidy
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  4. allow register multiple tables without input_aliases

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  5. cleanup tables created by profile columns

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  6. format better

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  7. Merge branch 'register_multiple_tables_convenience' into profile_colu… 

    …mns_cleanup
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  8. use register for lower memory usage

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  9. Merge pull request #2057 from moj-analytical-services/register_multip… 

    …le_tables_convenience

Make aliases for register multiple tables optional
    @RobinL
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  10. lint with black

    @RobinL
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  11. fix type-checking imports

    @ADBond
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  12. bump mypy version

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  13. fix SettingsCreator path logic

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  14. add tf_adjustment_chart test

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  15. wrap possible issue in read_resource

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  16. typing dialect base class

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  17. more specific type-hinting

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  18. expand on variables and types

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  19. fix types + var names

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  20. guard for missing _dialect_name_for_factory in lookup

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  21. SplinkDataFrame -> ABC

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  22. clarify vars

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  23. lint with black

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  24. allow ColumnExpression args

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  25. + base var

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  26. improve type-hinting settings

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  27. permissively typed dict, rather than inferred Noneish

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  28. colexp type hint

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  29. update temp-skipped typing modules

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  30. clarify var names

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  31. fix return type

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  32. permissive dict

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  33. type hinting and variable clarifications

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  34. update lockfile

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  35. mypy github action

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  36. mypy action - install correct group for library

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  37. specificy cache to this workflow

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  38. optional atts and ignoring downstream/compat issues

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  39. type hints and variable renamings

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  40. lint with black

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  41. br typing

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  42. optional attrs marked as such

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  43. only final on setters 

    final is not properly supported by mypy for property/setters. This form (on setter only, after setter decorator) means mypy is happy, but it won't complain if you overwrite this in a subclass, so only indicitive
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  44. more temporary mypy exclusions

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  45. generalise type

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  46. use alias to remove cyclicity

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  47. type hint

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  48. guard against sqlglot optionals

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  49. handle some blocking rule edge cases

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  50. correct arg type

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  51. default tf off - clarify

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  52. concrete type for merging dicts

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  53. lint with black

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  54. annotate init to check body

    @ADBond
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  55. Settings always dialected

    @ADBond
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  56. annotate default path, remove needless code

    @ADBond
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  57. lint with black

    @ADBond
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  58. clearer type - Sequence for covariance

    @ADBond
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  59. split out logic for getting cluster ids when not supplied

    @ADBond
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  60. deal with views

    @RobinL
    RobinL committed Mar 14, 2024
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  61. Merge pull request #2051 from moj-analytical-services/type-hinting-im… 

    …provements

Type hinting improvements - mypy conformance
    @ADBond
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  62. Merge branch 'splink4_dev' into profile_columns_cleanup

    @RobinL
    RobinL committed Mar 14, 2024
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  63. Merge pull request #2058 from moj-analytical-services/profile_columns… 

    …_cleanup

Clean up materialised tables that Splink creates when we're not using linker.py (profiling)
    @RobinL
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Commits on Mar 16, 2024

  1. Merge branch 'splink4_dev' into merge_3_to_4_2064

    @RobinL
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  2. update notebook for sam's new chart

    @RobinL
    RobinL committed Mar 16, 2024
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  3. Merge pull request #2065 from moj-analytical-services/merge_3_to_4_2064 

    Merge 3 to 4 2064
    @RobinL
    RobinL committed Mar 16, 2024
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Commits on Mar 19, 2024

  1. release

    @RobinL
    RobinL committed Mar 19, 2024
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  2. Merge pull request #2077 from moj-analytical-services/splink4_release… 

    …_dev3

Splink4 release dev3
    @RobinL
    RobinL committed Mar 19, 2024
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  3. update pyproject for dev release

    @RobinL
    RobinL committed Mar 19, 2024
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  4. Merge pull request #2078 from moj-analytical-services/update_pyproject 

    update pyproject for dev release
    @RobinL
    RobinL committed Mar 19, 2024
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  5. update release workflow

    @RobinL
    RobinL committed Mar 19, 2024
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  6. update colab links

    @RobinL
    RobinL committed Mar 19, 2024
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  7. Merge pull request #2080 from moj-analytical-services/update_colab_links 

    update colab links
    @RobinL
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Commits on Mar 25, 2024

  1. rm deprecated action and bash scripts

    @ThomasHepworth
    ThomasHepworth committed Mar 25, 2024
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  2. Merge branch 'splink4_dev' into maint/clean_up_deprecated_actions

    @ThomasHepworth
    ThomasHepworth committed Mar 25, 2024
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