Add wscleaner and get all tests working / reconfigure testing #224

	name: Automated scripts

	on:
	push:
	branches:
	- main
	- develop
	- 'feature/**'
	- 'hotfix/**'
	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ['3.10.6']

	steps:
	- name: Checkout head
	uses: actions/[email protected]
	with:
	fetch-depth: 2
	run: git checkout HEAD^
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/[email protected]
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python3 -m pip install --upgrade pip
	pip3 install flake8==6.0.0 wheel==0.38.4 pytest==7.2.1
	pip3 install -r requirements.txt
	echo "dummytoken" > /home/runner/work/.dnanexus_auth_token
	echo "dummypw" > /home/runner/work/.amazon_email_pw
	echo "dummyuser" > /home/runner/work/.amazon_email_username
	- name: Lint with flake8
	run: \|
	# stop the build if there are:
	# - syntax errors (E9)
	# - common assertion and comparison gotchas (F63)
	# - control flow gotchas (F7)
	# - undefined names (F82)
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=120 --statistics
	- name: Test with pytest
	# We do not want it to run the email tests because the credentials are not stored in GitHub
	run: \|
	python3 -m pytest -k 'not email and not wscleaner'

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