IGV webapp docker build

IGV.js webapp in a docker container

Building

Run the build.sh script to create the versioned docker image locally.

Configurations

Note that the resources folder will be replaced with the folder contained in this repo. This ensures that certain session/tracks can be configuraed according to the need of human genetic interpretations. In addition it allows the configurations to be rewritten so they point at the correct subpath the IGV webapp is served at (/igv).

DNAnexus track registry

A DNAnexus track registry will be read from /igv/resouorces/dynamic/hg19_dnanexus.csv. Required headers:

name,project,url,indexURL
...

Testing

a simplified test setup can be built and run with test.sh. It will serve an example hg19_dnanexus.csv track file that is placed in the test folder. When testing a new/revised instance, make sure to close and reopen the brower window and use an icognito instance to avoid caching issues.