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ICD11 --> ORDO mappings #12

Merged
merged 4 commits into from
Apr 18, 2024
Merged

ICD11 --> ORDO mappings #12

merged 4 commits into from
Apr 18, 2024

Commits on Mar 28, 2024

  1. Temp: ORDO mappings analysis

    Exploratory analysis to try to find the best way to get ORDO<->ICD11Foundation mappings.
    joeflack4 committed Mar 28, 2024
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  2. Temp: ORDO mappings analysis

    Exploratory analysis to try to find the best way to get ORDO<->ICD11Foundation mappings.
    joeflack4 committed Mar 28, 2024
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Commits on Mar 30, 2024

  1. ORDO Mappings

    - Add: New release output: ordo-icd11.sssom.tsv
      - Completed work in mappings.py
      - Add: utils.py for this: This file now has several functions that are exactly the same in several repositories. Needs to be put into a package.
    - Update: config/icd11.sssom-metadata.yml: removed some unnecessary entries. Added necessary ones.
    - Add: requirements*.txt files: for installation of Python packages; and updated readme about that.
    - Delete: Temporary anlalysis files in src/compare_*/
    - Add: icd11mms-exact-matches.sparql for querying ordo.owl for mappings. But this may not be necessary and may get removed.
    - Add: src/temp_compare_matches_owl_and_nomenclature.py: Temporary file for analysis for comparing Ordo->ICD11MMS exact matches from nomenclature file and from OWL release.
    - Bug fix: run.sh: Updated to an older version that works.
    joeflack4 committed Mar 30, 2024
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Commits on Apr 16, 2024

  1. ORDO Mappings

    - Delete: Unnecessary files and goals: temp analysis, getting of ordo.owl and querying it via SPARQL.
    - Add: SSSOM validation
    - Update: Replaced ad hoc SSSOM utilities with the ones from sssom-py
    - Add: mondo-icd11 mappings
    - Rename: SSSOM files: icd11 -> icd11foundation
    joeflack4 committed Apr 16, 2024
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