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Create mondo-nando.sssom.tsv #521

Merged
merged 14 commits into from
Jun 5, 2024
Merged

Create mondo-nando.sssom.tsv #521

merged 14 commits into from
Jun 5, 2024

Commits on Jun 4, 2024

  1. Create mondo-nando.sssom.tsv

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  2. Update mondo-nando.sssom.tsv

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  3. Update mondo-ingest.Makefile

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  4. Update mondo-nando.sssom.tsv

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  5. NanDO mappings 

    - Add: ROBOT template for NanDO mappings
- Update: Make goal for creating NanDO ROBOT template

General
- Add: Script for converting SSSOM to ROBOT template
    @joeflack4
    joeflack4 committed Jun 4, 2024
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  6. Update mapping set pipeline

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  7. Update goal: $(EXTERNAL_CONTENT_DIR)/nando-mappings.robot.tsv 

    Refactor future proof for potential future edge case bug

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn committed Jun 4, 2024
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  8. Update src/scripts/sssom_to_robot_template.py 

    Updated header field ORCID --> author_id, for consistency and correctness

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn committed Jun 4, 2024
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  9. Update src/scripts/sssom_to_robot_template.py 

    Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn committed Jun 4, 2024
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  10. SSSOMtoROBOT & NanDO mappings 

    SSSOMtoROBOT
- Bug fix: Column order was preventing axiom annotations from being correctly applied/linked.
- Add: mapping_provider
- Add: More skos -> MONDO mapping predicates
    @joeflack4
    joeflack4 committed Jun 4, 2024
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  11. Update goal $(MAPPINGSDIR)/%.sssom.tsv: 

    Changed make to $(MAKE) for consistency
    @joeflack4
    joeflack4 committed Jun 4, 2024
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  12. Update sssom_to_robot_template 

    Corrected a robot subheader

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn committed Jun 4, 2024
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  13. Update nando-mondo.sssom.tsv

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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  14. Fixed the remaining issues of the pipeline

    @matentzn @joeflack4
    matentzn authored and joeflack4 committed Jun 4, 2024
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