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Create mondo-nando.sssom.tsv - build #552

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wants to merge 17 commits into from
Closed

Create mondo-nando.sssom.tsv - build #552

wants to merge 17 commits into from

Commits on May 16, 2024

  1. Create mondo-nando.sssom.tsv

    @matentzn
    matentzn committed May 16, 2024
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  2. Update mondo-nando.sssom.tsv

    @matentzn
    matentzn committed May 16, 2024
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  3. Update mondo-ingest.Makefile

    @matentzn
    matentzn committed May 16, 2024
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  4. NanDO mappings 

    - Add: ROBOT template for NanDO mappings
- Update: Make goal for creating NanDO ROBOT template

General
- Add: Script for converting SSSOM to ROBOT template
    @joeflack4
    joeflack4 committed May 16, 2024
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Commits on May 17, 2024

  1. Update mondo-nando.sssom.tsv

    @matentzn
    matentzn committed May 17, 2024
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  2. Merge branch 'nando-mapping-set' of https://github.com/monarch-initia… 

    …tive/mondo-ingest into nando-mapping-set
    @matentzn
    matentzn committed May 17, 2024
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  3. Update mapping set pipeline

    @matentzn
    matentzn committed May 17, 2024
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  4. Update goal: $(EXTERNAL_CONTENT_DIR)/nando-mappings.robot.tsv 

    Refactor future proof for potential future edge case bug

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn authored May 17, 2024
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  5. Update src/scripts/sssom_to_robot_template.py 

    Updated header field ORCID --> author_id, for consistency and correctness

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn authored May 17, 2024
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  6. Update src/scripts/sssom_to_robot_template.py 

    Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn authored May 17, 2024
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  7. SSSOMtoROBOT & NanDO mappings 

    SSSOMtoROBOT
- Bug fix: Column order was preventing axiom annotations from being correctly applied/linked.
- Add: mapping_provider
- Add: More skos -> MONDO mapping predicates
    @joeflack4
    joeflack4 committed May 17, 2024
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Commits on May 19, 2024

  1. Update goal $(MAPPINGSDIR)/%.sssom.tsv: 

    Changed make to $(MAKE) for consistency
    @joeflack4
    joeflack4 authored May 19, 2024
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  2. Update sssom_to_robot_template 

    Corrected a robot subheader

Co-authored-by: Nico Matentzoglu <[email protected]>
    @joeflack4 @matentzn
    joeflack4 and matentzn authored May 19, 2024
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Commits on May 31, 2024

  1. Update nando-mondo.sssom.tsv

    @matentzn
    matentzn authored May 31, 2024
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  2. Merge branch 'main' into nando-mapping-set

    @matentzn
    matentzn committed May 31, 2024
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  3. Fixed the remaining issues of the pipeline

    @matentzn
    matentzn committed May 31, 2024
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Commits on Jun 1, 2024

  1. NanDO mapping set - build

    @joeflack4
    joeflack4 committed Jun 1, 2024
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