Filter out failed runs from post-facets processing

mskcc · Apr 11, 2023 · 035dd78 · 035dd78
1 parent 7929448
commit 035dd78
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/cwl/workflow_with_facets.cwl b/cwl/workflow_with_facets.cwl
@@ -334,6 +334,11 @@ steps:
             hisens_segs.push(inputs.pairs[i].hisens_seg)
           };
 
+          annotated_mafs = annotated_mafs.filter(function(elem){return elem; });
+          facets_txts = facets_txts.filter(function(elem){return elem; });
+          hisens_cncf_txts = hisens_cncf_txts.filter(function(elem){return elem; });
+          hisens_segs = hisens_segs.filter(function(elem){return elem; });
+
           return {
             "annotated_mafs": annotated_mafs,
             "facets_txts": facets_txts,