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Naming datasets

Jan Valosek edited this page Jul 4, 2024 · 8 revisions
Convention:
animal-pathology-anatomy-study/site-field_strength-contrast

when it is default, don't mention it.

Fields:
- animal = {human, dog, cat, rat, mouse, ...}, default=human
- pathology = {hc, ms, dcm, tumor, ...} default=None (hc: healthy control, ms: multiple sclerosis, dcm: degenerative cervical myelopathy)
- anatomy = {brain, brainstem, cervical, lumbar, foot, ...}, default=None (if brain or brainstem or cervical, do not mention this)
- study/site = {canproco, leipzig, ...}  Study associated with the dataset
- field_strength = {3t, 7t, ...}, default=3t
- contrast/modality = {t1, t2, t2star, dwi, psir, stir, sem, tem, oi, ...}, default=None (if data is multiple contrasts, do not mention this; use it only for specific contrast, e.g., mp2rage)

Examples:
- ms-basel-mp2rage
- hc-spinegeneric
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