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Support Python 3.12 and test in CI #1678

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Support Python 3.12 and test in CI #1678

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bd69a96
Support Python 3.12, test 3.12 and 3.13 in CI
corneliusroemer Nov 14, 2024
9822cf1
Python 3.13 is blocked on biopython support
corneliusroemer Nov 14, 2024
5621990
Update minimum biopython version in CI to first that supports Python …
corneliusroemer Nov 14, 2024
d4da44c
fix comment
corneliusroemer Nov 14, 2024
2485359
Still test for biopython 1.80
corneliusroemer Nov 14, 2024
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13 changes: 9 additions & 4 deletions .github/workflows/ci.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -45,11 +45,16 @@ jobs:
- '3.9'
- '3.10'
- '3.11'
biopython-version:
# list of Biopython versions with support for a new Python version
# from https://github.com/biopython/biopython/blob/master/NEWS.rst
- '3.12'
biopython-version:
# list of Biopython versions with support for a new Python version
# from https://github.com/biopython/biopython/blob/master/NEWS.rst
- '1.80' # first to support Python 3.10 and 3.11
- '' # latest
- '1.82' # first to support Python 3.12
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- '' # latest
exclude:
# some older Biopython versions are incompatible with later Python versions
- { biopython-version: '1.80', python-version: '3.12' }
defaults:
run:
shell: bash -l {0}
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1 change: 1 addition & 0 deletions setup.py
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Expand Up @@ -106,6 +106,7 @@
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
],
# Install an "augur" program which calls augur.__main__.main()
# https://setuptools.readthedocs.io/en/latest/setuptools.html#automatic-script-creation
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