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Adding and simplifying MaskPrimers options #1262

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Adding and simplifying MaskPrimers options

Adding and simplifying MaskPrimers options #1262

Triggered via pull request October 14, 2024 18:53
@ggabernetggabernet
synchronize #344
ggabernet:dev
Status Cancelled
Total duration 16m 16s
Artifacts 13

ci.yml

on: pull_request
Matrix: test
Matrix: Run workflow test with different profiles
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29 errors and 21 warnings
Run workflow test with different profiles (23.04.0, test_nocluster)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_assembled_mm)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_no_umi)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_assembled_hs)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_clontech_umi)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_10x_sc)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_maskprimers_extract)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_tcr)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_maskprimers_align)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Process completed with exit code 1.
Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run pipeline with test data (24.04.2 | test | docker)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_maskprimers_align)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run workflow test with different profiles (latest-everything, test_maskprimers_align)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The operation was canceled.
Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_tcr)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run workflow test with different profiles (latest-everything, test_tcr)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_10x_sc)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run workflow test with different profiles (latest-everything, test_10x_sc)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_maskprimers_extract)
Canceling since a higher priority waiting request for 'nf-core CI-344' exists
Run workflow test with different profiles (latest-everything, test_maskprimers_extract)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_10x_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_maskprimers_extract)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_tcr)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_fetchimgt)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_maskprimers_align)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_10x_sc
5.56 MB
logs-test_assembled_hs
5.56 MB
logs-test_assembled_mm
5.56 MB
logs-test_clontech_umi
5.56 MB
logs-test_fetchimgt
5.56 MB
logs-test_maskprimers_align
5.56 MB
logs-test_maskprimers_extract
5.56 MB
logs-test_nebnext_umi
5.56 MB
logs-test_no_umi
5.56 MB
logs-test_nocluster
5.56 MB
logs-test_rnaseq_bulk
5.56 MB
logs-test_rnaseq_sc
5.56 MB
logs-test_tcr
5.56 MB