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Adding and simplifying MaskPrimers options #1270

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Adding and simplifying MaskPrimers options

Adding and simplifying MaskPrimers options #1270

Triggered via pull request October 19, 2024 16:54
@ggabernetggabernet
synchronize #344
ggabernet:dev
Status Failure
Total duration 4h 1m 4s
Artifacts 4

ci.yml

on: pull_request
Matrix: test
Matrix: Run workflow test with different profiles
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12 errors and 26 warnings
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (24.04.2, test_rnaseq_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (24.04.2, test_rnaseq_bulk)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (24.04.2, test_rnaseq_sc)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (24.04.2, test_rnaseq_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Process completed with exit code 1.
Run workflow test with different profiles (24.04.2, test_clontech_umi)
Process completed with exit code 1.
Run workflow test with different profiles (24.04.2, test_10x_sc)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (24.04.2, test_10x_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_10x_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_maskprimers_align)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_maskprimers_extract)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_maskprimers_align)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_maskprimers_extract)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_fetchimgt)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_tcr)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_tcr)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (24.04.2, test_10x_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_10x_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_10x_sc
31.9 MB
logs-test_clontech_umi
83.9 MB
logs-test_rnaseq_bulk
9.33 MB
logs-test_rnaseq_sc
9.33 MB