Skip to content
nf-core CI

clonal_threshold accepts multiple values in nextflow_schema.json #1046

Sign in to view logs

clonal_threshold accepts multiple values in nextflow_schema.json

clonal_threshold accepts multiple values in nextflow_schema.json #1046

Triggered via pull request December 21, 2023 17:01
@adamrtalbotadamrtalbot
opened #293
adamrtalbot:292_clonal_threshold_accepts_multiple_values
Status Cancelled
Total duration 39m 40s
Artifacts 5

ci.yml

on: pull_request
Matrix: Run pipeline with test data
Matrix: Run workflow test with different profiles
Fit to window
Zoom out
Zoom in

Annotations

11 errors and 6 warnings
Run pipeline with test data (latest-everything)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_tcr)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_no_umi)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_assembled_mm)
Process completed with exit code 1.
Run pipeline with test data (23.04.0)
The job was canceled because "latest-everything" failed.
Run pipeline with test data (23.04.0)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_nocluster)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_assembled_hs)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
ENOENT: no such file or directory, stat '/home/runner/work/airrflow/airrflow/work/b3/b8afd6dcb56c2f455a162c9e1d6ff8/imgtdb_base/human/vdj_aa/imgt_aa_human_IGHV.fasta.tmp'
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_tcr)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_no_umi)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_nocluster)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_assembled_hs Expired
18.8 MB
logs-test_assembled_mm Expired
18.1 MB
logs-test_no_umi Expired
19.9 MB
logs-test_nocluster Expired
25.5 MB
logs-test_tcr Expired
18.8 MB