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Updates cellranger_vdj #187

Updates cellranger_vdj

Updates cellranger_vdj #187

Triggered via pull request February 19, 2024 14:01
Status Failure
Total duration 10m 13s
Artifacts 2

ci_immcantation.yml

on: pull_request
Matrix: Run workflow with immcantation devel test_container
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8 errors and 12 warnings
Run workflow with immcantation devel test_container (23.04.0, test_raw_immcantation_devel)
Artifact path is not valid: /work/airrflow/airrflow/work/38/59ee63354a244db02838b6e6fa1052/?/.java/fonts/17.0.3-internal/fcinfo-1-28b4f1a88e4b-Linux-6.2.0-1019-azure-en-.properties. Contains the following character: Question mark ? Invalid characters include: Double quote ", Colon :, Less than <, Greater than >, Vertical bar |, Asterisk *, Question mark ?, Carriage return \r, Line feed \n The following characters are not allowed in files that are uploaded due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
Run workflow with immcantation devel test_container (latest-everything, test_raw_immcantation_devel)
Artifact path is not valid: /work/airrflow/airrflow/work/15/04d6ea5b14cf8200b2cc8e4137ab27/?/.java/fonts/17.0.3-internal/fcinfo-1-f1ab94bd6842-Linux-6.2.0-1019-azure-en-.properties. Contains the following character: Question mark ? Invalid characters include: Double quote ", Colon :, Less than <, Greater than >, Vertical bar |, Asterisk *, Question mark ?, Carriage return \r, Line feed \n The following characters are not allowed in files that are uploaded due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
Run workflow with immcantation devel test_container (latest-everything, test_assembled_immcantati...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (latest-everything, test_assembled_immcantati...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow with immcantation devel test_container (23.04.0, test_assembled_immcantation_devel_mm)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (23.04.0, test_assembled_immcantation_devel_mm)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow with immcantation devel test_container (latest-everything, test_assembled_immcantati...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (latest-everything, test_assembled_immcantati...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow with immcantation devel test_container (23.04.0, test_assembled_immcantation_devel_hs)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (23.04.0, test_assembled_immcantation_devel_hs)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow with immcantation devel test_container (23.04.0, test_raw_immcantation_devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (23.04.0, test_raw_immcantation_devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow with immcantation devel test_container (latest-everything, test_raw_immcantation_devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow with immcantation devel test_container (latest-everything, test_raw_immcantation_devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_assembled_immcantation_devel_hs Expired
227 MB
logs-test_assembled_immcantation_devel_mm Expired
298 MB