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Template Update + cellranger functionality #1135

Template Update + cellranger functionality

Template Update + cellranger functionality #1135

Triggered via pull request March 31, 2024 23:49
@ggabernetggabernet
synchronize #315
dev
Status Failure
Total duration 33m 47s
Artifacts

ci.yml

on: pull_request
Matrix: Run pipeline with test data
Matrix: Run workflow test with different profiles
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4 errors and 22 warnings
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Artifact path is not valid: /work/airrflow/airrflow/work/16/b7436404e08e2b69bfdaf90f5f1d46/?/.java/fonts/17.0.3-internal/fcinfo-1-ed30a8874783-Linux-6.5.0-1016-azure-en-.properties. Contains the following character: Question mark ? Invalid characters include: Double quote ", Colon :, Less than <, Greater than >, Vertical bar |, Asterisk *, Question mark ?, Carriage return \r, Line feed \n The following characters are not allowed in files that are uploaded due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Artifact path is not valid: /work/airrflow/airrflow/work/3a/385743490c8a7d707825d300703716/?/.java/fonts/17.0.3-internal/fcinfo-1-92665d72fda8-Linux-6.5.0-1016-azure-en-.properties. Contains the following character: Question mark ? Invalid characters include: Double quote ", Colon :, Less than <, Greater than >, Vertical bar |, Asterisk *, Question mark ?, Carriage return \r, Line feed \n The following characters are not allowed in files that are uploaded due to limitations with certain file systems such as NTFS. To maintain file system agnostic behavior, these characters are intentionally not allowed to prevent potential problems with downloads on different file systems.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_10x_sc)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_10x_sc)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_no_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_no_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_assembled_hs)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_assembled_hs)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_assembled_mm)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_assembled_mm)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_clontech_umi)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_nocluster)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_nocluster)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_tcr)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_tcr)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.