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unselected RNA-seq based workflow #1180

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unselected RNA-seq based workflow

unselected RNA-seq based workflow #1180

Triggered via pull request May 16, 2024 11:02
@mapo9mapo9
opened #334
mapo9:trust4
Status Cancelled
Total duration 6m 10s
Artifacts 4

ci.yml

on: pull_request
Matrix: Run pipeline with test data
Matrix: Run workflow test with different profiles
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39 errors and 18 warnings
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_nocluster)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
Process completed with exit code 1.
Run pipeline with test data (latest-everything)
Process completed with exit code 1.
Run pipeline with test data (23.04.0)
The job was canceled because "latest-everything" failed.
Run pipeline with test data (23.04.0)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_nocluster)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_10x_sc)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_10x_sc)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_assembled_mm)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_10x_sc)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_10x_sc)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_clontech_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_clontech_umi)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_assembled_mm)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_assembled_mm)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_assembled_hs)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_clontech_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_clontech_umi)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_tcr)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_tcr)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_tcr)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_tcr)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_assembled_hs)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_assembled_hs)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_no_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (23.04.0, test_no_umi)
The operation was canceled.
Run workflow test with different profiles (latest-everything, test_no_umi)
Canceling since a higher priority waiting request for 'nf-core CI-334' exists
Run workflow test with different profiles (latest-everything, test_no_umi)
The operation was canceled.
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_nocluster)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_nocluster)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_nocluster)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (23.04.0, test_nocluster)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "logs-test_fetchimgt", "logs-test_nocluster", "logs-test_rnaseq_bulk", "logs-test_rnaseq_sc". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime
Name Size
logs-test_fetchimgt Expired
18.2 MB
logs-test_nocluster Expired
28.2 MB
logs-test_rnaseq_bulk Expired
15.9 MB
logs-test_rnaseq_sc Expired
11.9 MB