unselected RNA-seq based workflow #1190

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Triggered via pull request May 28, 2024 17:12

ggabernet

synchronize #334

mapo9:trust4

Status Failure

Total duration 37m 25s

Artifacts 4

ci.yml

on: pull_request

Matrix: Run pipeline with test data

Matrix: Run workflow test with different profiles

Annotations

11 errors and 32 warnings

Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)

Process completed with exit code 1.

Run workflow test with different profiles (23.04.0, test_rnaseq_sc)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_rnaseq_sc)

Process completed with exit code 1.

Run workflow test with different profiles (23.04.0, test_fetchimgt)

Process completed with exit code 1.

Run workflow test with different profiles (23.04.0, test_nocluster)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_fetchimgt)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)

Process completed with exit code 1.

Run workflow test with different profiles (latest-everything, test_nocluster)

Process completed with exit code 1.

Run pipeline with test data (23.04.0)

Process completed with exit code 1.

Run pipeline with test data (latest-everything)

The job was canceled because "_23_04_0" failed.

Run pipeline with test data (latest-everything)

The operation was canceled.

Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (23.04.0, test_rnaseq_sc)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_rnaseq_sc)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (latest-everything, test_rnaseq_sc)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_rnaseq_sc)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (23.04.0, test_fetchimgt)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_fetchimgt)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (23.04.0, test_nocluster)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_nocluster)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (latest-everything, test_fetchimgt)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_fetchimgt)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run workflow test with different profiles (latest-everything, test_nocluster)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_nocluster)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run pipeline with test data (23.04.0)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_10x_sc)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_10x_sc)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_no_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_no_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_nebnext_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_assembled_hs)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_nebnext_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_assembled_hs)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_assembled_mm)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_assembled_mm)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_clontech_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_clontech_umi)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (latest-everything, test_tcr)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run workflow test with different profiles (23.04.0, test_tcr)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Deprecation notice: v1, v2, and v3 of the artifact actions

The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "logs-test_fetchimgt", "logs-test_nocluster", "logs-test_rnaseq_bulk", "logs-test_rnaseq_sc". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/

Artifacts

Produced during runtime

Name	Size
logs-test_fetchimgt Expired	40.6 MB
logs-test_nocluster Expired	72.3 MB
logs-test_rnaseq_bulk Expired	15.9 MB
logs-test_rnaseq_sc Expired	15.9 MB