oops fix container tag

nf-core · Apr 22, 2024 · 43cf4d5 · 43cf4d5
1 parent ffb761a
commit 43cf4d5
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Showing 13 changed files with 26 additions and 26 deletions.
diff --git a/modules/local/airrflow_report/airrflow_report.nf b/modules/local/airrflow_report/airrflow_report.nf
@@ -6,8 +6,8 @@ process AIRRFLOW_REPORT {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tab) // sequence tsv table in AIRR format

diff --git a/modules/local/enchantr/collapse_duplicates.nf b/modules/local/enchantr/collapse_duplicates.nf
@@ -8,8 +8,8 @@ process COLLAPSE_DUPLICATES {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tabs) // tuple [val(meta), sequence tsv in AIRR format ]

diff --git a/modules/local/enchantr/define_clones.nf b/modules/local/enchantr/define_clones.nf
@@ -25,8 +25,8 @@ process DEFINE_CLONES {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tabs) // meta, sequence tsv in AIRR format

diff --git a/modules/local/enchantr/detect_contamination.nf b/modules/local/enchantr/detect_contamination.nf
@@ -9,8 +9,8 @@ process DETECT_CONTAMINATION {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     path(tabs)

diff --git a/modules/local/enchantr/dowser_lineages.nf b/modules/local/enchantr/dowser_lineages.nf
@@ -25,8 +25,8 @@ process DOWSER_LINEAGES {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tabs)

diff --git a/modules/local/enchantr/find_threshold.nf b/modules/local/enchantr/find_threshold.nf
@@ -25,8 +25,8 @@ process FIND_THRESHOLD {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
 
     input:

diff --git a/modules/local/enchantr/remove_chimeric.nf b/modules/local/enchantr/remove_chimeric.nf
@@ -9,8 +9,8 @@ process REMOVE_CHIMERIC {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
 
     input:

diff --git a/modules/local/enchantr/report_file_size.nf b/modules/local/enchantr/report_file_size.nf
@@ -10,8 +10,8 @@ process REPORT_FILE_SIZE {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     path logs

diff --git a/modules/local/enchantr/single_cell_qc.nf b/modules/local/enchantr/single_cell_qc.nf
@@ -24,8 +24,8 @@ process SINGLE_CELL_QC {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     path(tabs)

diff --git a/modules/local/enchantr/validate_input.nf b/modules/local/enchantr/validate_input.nf
@@ -10,8 +10,8 @@ process VALIDATE_INPUT {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     file samplesheet

diff --git a/modules/local/reveal/add_meta_to_tab.nf b/modules/local/reveal/add_meta_to_tab.nf
@@ -7,8 +7,8 @@ process ADD_META_TO_TAB {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     cache 'deep' // Without 'deep' this process would run when using -resume
 

diff --git a/modules/local/reveal/filter_junction_mod3.nf b/modules/local/reveal/filter_junction_mod3.nf
@@ -7,8 +7,8 @@ process FILTER_JUNCTION_MOD3 {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tab) // sequence tsv in AIRR format

diff --git a/modules/local/reveal/filter_quality.nf b/modules/local/reveal/filter_quality.nf
@@ -7,8 +7,8 @@ process FILTER_QUALITY {
         error "nf-core/airrflow currently does not support Conda. Please use a container profile instead."
     }
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker.io/immcantation/airrflow:4.4.0':
-        'docker.io/immcantation/airrflow:4.4.0' }"
+        'docker.io/immcantation/airrflow:4.0.0':
+        'docker.io/immcantation/airrflow:4.0.0' }"
 
     input:
     tuple val(meta), path(tab) // sequence tsv in AIRR format