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Merge pull request #313 from immcantation/dev
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updated nih url to add nlm
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ggabernet authored Mar 22, 2024
2 parents 699948a + 33f8a45 commit 4caa8da
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions bin/fetch_igblastdb.sh
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ fi

# Fetch database
wget -q -r -nH --cut-dirs=5 --no-parent \
ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database \
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/igblast/release/database \
-P ${OUTDIR}/database

# Extract
Expand All @@ -59,11 +59,11 @@ tar -C ${OUTDIR}/database -xf ${OUTDIR}/database/rhesus_monkey_VJ.tar
if $DOWNLOAD_ALL; then
# Fetch internal_data
wget -q -r -nH --cut-dirs=5 --no-parent \
ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/old_internal_data \
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/igblast/release/old_internal_data \
-P ${OUTDIR}/internal_data

# Fetch optional_file
wget -q -r -nH --cut-dirs=5 --no-parent \
ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/old_optional_file \
ftp://ftp.ncbi.nlm.nih.gov/blast/executables/igblast/release/old_optional_file \
-P ${OUTDIR}/optional_file
fi

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