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/* | ||
* ------------------------------------------------- | ||
* Nextflow config file for running tests | ||
* ------------------------------------------------- | ||
* Defines bundled input files and everything required | ||
* to run a fast and simple test. Use as follows: | ||
* nextflow run nf-core/airrflow -profile test_rnaseq_sc,<docker/singularity> | ||
*/ | ||
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params { | ||
config_profile_name = 'Test single-cell RNA-seq based workflow using TRUST4' | ||
config_profile_description = 'Minimal test dataset to check pipeline function with raw single-cell RNA-seq data' | ||
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// Limit resources so that this can run on GitHub Actions | ||
max_cpus = 2 | ||
max_memory = 6.GB | ||
max_time = 48.h | ||
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// params | ||
mode = 'fastq' | ||
library_generation_method = 'trust4' | ||
clonal_threshold = 0 | ||
barcode_read = R1 | ||
umi_position = R1 | ||
read_format = "bc:0:15,um:16:27" | ||
skip_lineage = True | ||
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// Input data | ||
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-rnaseq/sc_rnaseq_metadata.tsv' | ||
coord_fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/airrflow/testdata-rnaseq/IMGT+C.fa' | ||
} |
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