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Release 3.2.0 #282

Merged
merged 147 commits into from
Oct 27, 2023
Merged

Release 3.2.0 #282

merged 147 commits into from
Oct 27, 2023

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ggabernet
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/airrflow branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

ssnn-airr and others added 30 commits March 21, 2023 18:46
@ssnn-airr
fixed typo in docs
3871d43
@ssnn-airr
dont write filter pass output repertoire if empty
323bb6f
@ssnn-airr
forgot to make this output optional
55f002f
@ssnn-airr
added dowser ext.args minseq, traits and tips
57a6ec4
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
29f0618
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
9f065ed
@ssnn-airr
updated error message
67ffd27
@ggabernet
Merge pull request #254 from immcantation/dev
06d69c1 
dowser updates
@ssnn-airr
rm to have igblast reassign the c_call
a1e4674
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
b969a7a
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
25b3abe
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
ada49d0
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
bfb1de0
@ssnn-airr
Merge branch 'dev' of https://github.com/nf-core/airrflow into dev
744894c
@ssnn-airr
fix error directory or other parameter too long
4808422
@ssnn-airr
revert
92988fa
@ssnn-airr
(＠_＠)
2cd8a53
@ssnn-airr
fixes for large .command.sh
d669012
@ssnn-airr
fixes for large .commad.sh
48d8826
@ssnn-airr
user airr, stringi and subset data
a644882
@ggabernet
fix report use read rearrangement
be281bd
@ggabernet
add samplesheet check assembled
716fc5e
@ggabernet
fix black linting
b6c89e9
@ggabernet
back to dev version
db67677
@ggabernet
fix var name
c42be4f
@ggabernet
Update assets/repertoire_comparison.Rmd
39f34a5
@ggabernet
Update assets/repertoire_comparison.Rmd
9490ce0
@ggabernet
Add params findthreshold
402cb7f
@ggabernet
update changelog
b53a6a1
@ssnn-airr
species mix not allowed use a samplesheet per species
f0862bc
ssnn-airr
ssnn-airr reviewed Oct 24, 2023
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ggabernet
ggabernet commented Oct 24, 2023
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pinin4fjords
pinin4fjords approved these changes Oct 26, 2023
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Deferring somewhat to individual PR reviewers, but looks good to me.

ggabernet
ggabernet commented Oct 26, 2023
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ggabernet
ggabernet commented Oct 26, 2023
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ggabernet
ggabernet commented Oct 26, 2023
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ggabernet
ggabernet commented Oct 26, 2023
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@ggabernet ggabernet merged commit 333c8b5 into master Oct 27, 2023
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@pinin4fjords pinin4fjords pinin4fjords approved these changes

@ssnn-airr ssnn-airr ssnn-airr approved these changes

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5 participants
@ggabernet @pinin4fjords @ssnn-airr @nf-core-bot @mdeboth