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Use cached reference data by default #284

Merged
merged 4 commits into from
Oct 23, 2023
Merged

Use cached reference data by default #284

merged 4 commits into from
Oct 23, 2023

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ggabernet
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  • Use cached reference data by default

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/airrflow branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Oct 23, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7da8d0b

+| ✅ 157 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 3.2.0
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-23 21:16:51

@ggabernet ggabernet merged commit daa1bbd into nf-core:dev Oct 23, 2023
16 of 24 checks passed
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@ssnn-airr ssnn-airr ssnn-airr approved these changes

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@ggabernet @ssnn-airr