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Release 4.1 #337

Merged
merged 37 commits into from
Jun 1, 2024
Merged

Release 4.1 #337

merged 37 commits into from
Jun 1, 2024

Commits on May 8, 2024

  1. Template update for nf-core/tools version 2.14.0

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    nf-core-bot committed May 8, 2024
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Commits on May 9, 2024

  1. Template update for nf-core/tools version 2.14.1

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    nf-core-bot committed May 9, 2024
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Commits on May 20, 2024

  1. try fix report file size

    @ggabernet
    ggabernet committed May 20, 2024
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  2. fix sequence number plot

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    ggabernet committed May 20, 2024
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Commits on May 28, 2024

  1. update changelog

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    ggabernet committed May 28, 2024
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  2. Merge branch 'TEMPLATE' of https://github.com/nf-core/airrflow into m… 

    …erge-template-updates
    @ggabernet
    ggabernet committed May 28, 2024
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  3. update testdata base path

    @ggabernet
    ggabernet committed May 28, 2024
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  4. rm custom software versions

    @ggabernet
    ggabernet committed May 28, 2024
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  5. solve warning

    @ggabernet
    ggabernet committed May 28, 2024
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  6. fix testdata path param

    @ggabernet
    ggabernet committed May 28, 2024
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  7. rm monochromelog warning

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    ggabernet committed May 28, 2024
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  8. update old container biopython

    @ggabernet
    ggabernet committed May 28, 2024
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  9. revert monochrome logs as nf-core lint fails

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    ggabernet committed May 28, 2024
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  10. Merge pull request #335 from ggabernet/dev 

    Fix report plots
    @ggabernet
    ggabernet authored May 28, 2024
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Commits on May 30, 2024

  1. update container airrflow 4.1.0

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    ggabernet committed May 30, 2024
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  2. test the dev container

    @ggabernet
    ggabernet committed May 30, 2024
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  3. update container

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    ggabernet committed May 30, 2024
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  4. update changelog

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    ggabernet committed May 30, 2024
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  5. improve protocol logs

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    ggabernet committed May 30, 2024
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  6. presto wasnt updated

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    ggabernet committed May 30, 2024
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  7. fix linting

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    ggabernet committed May 30, 2024
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  8. rm irrelevant param

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    ggabernet committed May 30, 2024
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  9. Merge pull request #336 from ggabernet/dev 

    Immcantation version bump
    @ggabernet
    ggabernet authored May 30, 2024
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Commits on May 31, 2024

  1. Update docs/usage.md 

    Co-authored-by: Jose Espinosa-Carrasco <[email protected]>
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    ggabernet and JoseEspinosa authored May 31, 2024
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  2. add tutorial

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    ggabernet committed May 31, 2024
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  3. simplify container

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    ggabernet committed May 31, 2024
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  4. update test data param

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    ggabernet committed May 31, 2024
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  5. Merge pull request #338 from ggabernet/dev 

    Apply PR review comments
    @ggabernet
    ggabernet authored May 31, 2024
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  6. update reference defaluts

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    ggabernet committed May 31, 2024
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  7. Merge branch 'dev' of https://github.com/nf-core/airrflow into dev

    @ggabernet
    ggabernet committed May 31, 2024
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  8. merge upstream

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    ggabernet committed May 31, 2024
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  9. Update docs/usage.md 

    Co-authored-by: Jose Espinosa-Carrasco <[email protected]>
    @ggabernet @JoseEspinosa
    ggabernet and JoseEspinosa authored May 31, 2024
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  10. update default in schema

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    ggabernet committed May 31, 2024
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  11. Merge branch 'dev' of https://github.com/nf-core/airrflow into dev

    @ggabernet
    ggabernet committed May 31, 2024
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  12. merge upstream

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    ggabernet committed May 31, 2024
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Commits on Jun 1, 2024

  1. allow skip multiqc

    @ggabernet
    ggabernet committed Jun 1, 2024
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  2. update tutorial script

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    ggabernet committed Jun 1, 2024
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