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New bulk 5'-RACE supported protocol, non-overlaping reads rescue #343

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New bulk 5'-RACE supported protocol, non-overlaping reads rescue #343

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Commits on Jun 1, 2024

  1. Merge pull request nf-core#337 from nf-core/dev 

    Release 4.1
    @ggabernet
    ggabernet authored Jun 1, 2024
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Commits on Aug 5, 2024

  1. Add new 5'-RACE protocol support

    Justine Pollet committed Aug 5, 2024
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  2. New presto_maskprimers_align_trim module and adjust presto_umi subwor… 

    …kflow for this new 5'-RACE support
    Justine Pollet committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. presto_maskprimers_align_trim module conf and update nextflow_schema … 

    …JSON
    Justine Pollet committed Aug 6, 2024
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  2. pipeline work with the new protocol

    Justine Pollet committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. pipeline work with new option --assemblepairs_join but with --failed … 

    …parameter in nexflow user custom conf files for PRESTO_ASSEMBLEPAIRS_UMI process via args.
    Justine Pollet committed Aug 7, 2024
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  2. default value for --assemblepairs_join option, PRESTO_ASSEMBLEPAIRS_U… 

    …MI always output failed reads
    Justine Pollet committed Aug 7, 2024
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  3. qc graph not include join reads

    Justine Pollet committed Aug 7, 2024
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Commits on Aug 8, 2024

  1. fix test profile

    Justine Pollet committed Aug 8, 2024
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  2. update doc/usage.md

    Justine Pollet committed Aug 8, 2024
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Commits on Aug 20, 2024

  1. Merge branch 'dev' into master

    @ggabernet
    ggabernet authored Aug 20, 2024
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