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nf-core/airrflow version 3.2.0 "Expecto patronum"
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@ggabernet ggabernet released this 27 Oct 13:24
· 208 commits to master since this release
3.2.0
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[3.2.0] - 2023-10-27 Expecto patronum

Added

  • #268 Added parameters for FindThreshold in modules.config.
  • #268 Validate samplesheet also for assembled samplesheet.
  • #259 Update to EnchantR v0.1.3.
  • #266 Added clonal reports tables to final report folder.
  • #266 Added processes to include sampleID to filename in assembled workflow to keep it unique.
  • #276 Parametrize FindThreshold Report and Presto Buildconsensus UMI.
  • #281 Update to nf-core tools v2.10.

Fixed

  • #268 Allows for uppercase and lowercase locus in samplesheet pcr_target_locus.
  • #259 Samplesheet only allows data from one species.
  • #259 Introduced fix for a too long command with hundreds of datasets.
  • #266 Convert samplesheet required columns to strings when needed.
  • #284: Use cached IMGT and IgBlast reference data by default.

Dependencies

Dependency Old version New version
r-enchantr 0.1.2 0.1.9
r-alakazam 1.2.1 1.3.0
r-shazam 1.1.0 1.2.0
r-dowser 1.2.0 2.0.0
fastqc 0.11.9 0.12.1

Contributors: @ssnn-airr @ggabernet @mdeboth

Contributors

ggabernet, mdeboth, and ssnn-airr
Assets 2
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