Workflow output definition #963
GitHub Actions / JUnit Test Report
failed
Feb 28, 2024 in 0s
2 tests run, 1 passed, 0 skipped, 1 failed.
Annotations
Check failure on line 1 in Parameters: --download_method sratools
github-actions / JUnit Test Report
Parameters: --download_method sratools
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/a3f98fa2447097ae52f7f0c28c9fd2e5/meta/mock.nf` [lethal_wiles] DSL2 - revision: 1344f41b7b
Downloading plugin [email protected]
[6d/21dd17] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[bd/e294c5] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[9a/357f09] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[e5/2fdc0c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[4c/e09aba] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[5a/1c83ea] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[02/53d75c] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS (ncbi-settings)
[5b/defbe3] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (DRR028935)
[f7/2a022f] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (SRR9984183)
[16/300ca0] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (ERR1160846)
[e9/729ef4] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (DRX026011_DRR028935)
[90/b9d07f] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (SRX6725035_SRR9984183)
[e6/8759c6] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (ERX1234253_ERR1160846)
[ab/c07f74] Submitted process > SRA:SRA_TO_SAMPLESHEET
[05/9b741c] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
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