Workflow output definition #963
GitHub Actions / JUnit Test Report
failed
Feb 28, 2024 in 0s
7 tests run, 1 passed, 0 skipped, 6 failed.
Annotations
Check failure on line 1 in Parameters: --nf_core_pipeline rnaseq
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline rnaseq
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/2599673342ff43612ff5d2c71e6538ee/meta/mock.nf` [boring_monod] DSL2 - revision: 1344f41b7b
Downloading plugin [email protected]
[72/167c9e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[9a/a23ce3] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[b4/43dc45] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[38/10225c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[51/41d593] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[a4/3a3f32] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[d1/e4154b] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[0e/2d7f1b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[a9/e85f52] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[0c/146a4d] Submitted process > SRA:SRA_TO_SAMPLESHEET
[2d/5a5c6f] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in .devcontainer
github-actions / JUnit Test Report
.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/8b973ab156599d87f83112471195810d/meta/mock.nf` [nasty_hamilton] DSL2 - revision: 1344f41b7b
[00/4544d8] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[5c/1263df] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[3f/5acd06] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[3d/9b82ff] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[a1/4f994e] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[af/3d3c23] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[3d/1abe96] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[a5/ae3e09] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[6e/f0ab7c] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[ba/9eeb07] Submitted process > SRA:SRA_TO_SAMPLESHEET
[33/8a2a5e] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline viralrecon
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline viralrecon
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/b6119d1bc44a05070663cabe6d10e8c3/meta/mock.nf` [tender_solvay] DSL2 - revision: 1344f41b7b
[c9/ae1ad0] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[14/224730] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[17/eec8f0] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[e4/635c09] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[ae/626e6c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[68/dd368e] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[30/b8c870] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[cf/c3cf63] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[b4/209f7a] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[c2/15c4cd] Submitted process > SRA:SRA_TO_SAMPLESHEET
[e4/6f3617] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline atacseq
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline atacseq
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/7c7c71c862b2f925a2446f34a598cef7/meta/mock.nf` [agitated_leakey] DSL2 - revision: 1344f41b7b
[40/35795e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[87/9eee8b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[fd/e5bdf6] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[fc/2d3a9b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[16/0648ba] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[6a/e64075] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[67/5ab19d] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[1f/b0902f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[a9/5c997d] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[dd/905019] Submitted process > SRA:SRA_TO_SAMPLESHEET
[6a/5c27ae] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: --nf_core_pipeline taxprofiler
github-actions / JUnit Test Report
Parameters: --nf_core_pipeline taxprofiler
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/373310d47d878172dd887ebfbc32cceb/meta/mock.nf` [clever_sinoussi] DSL2 - revision: 1344f41b7b
[dc/ae392e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[c4/f6494d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[de/39a922] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[1a/719446] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[1f/ae8e3d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[0a/d42ab4] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[3e/b3896c] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[34/57900f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[b9/d19274] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[f8/554d27] Submitted process > SRA:SRA_TO_SAMPLESHEET
[12/0488bb] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Check failure on line 1 in Parameters: default
github-actions / JUnit Test Report
Parameters: default
Assertion failed:
2 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.01.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/cbeb2a3299add8cdc56b0eebd95d2296/meta/mock.nf` [voluminous_nightingale] DSL2 - revision: 1344f41b7b
[8f/5d3d75] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[e9/191cd7] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[4c/e61072] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[8e/0d175c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[3d/74411b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[eb/ee5d17] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[42/5dc21c] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[5a/e7218d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[05/2bca63] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[18/63a3e2] Submitted process > SRA:SRA_TO_SAMPLESHEET
[e4/d77bb0] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG
Nextflow stderr:
Loading