318 update for tes compliance #1025
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: --skip_fastq_download
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-8438f5d91bc08a5f29f200962ac061dc.nf` [distraught_mandelbrot] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[d7/3714fb] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[ab/f1b3e1] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[87/7d5007] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[bd/80eac8] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
[10/548414] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[71/cea90e] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[0a/b0d554] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[9b/f9a2a9] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[27/e183dd] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[a5/92f709] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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