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318 update for tes compliance #1025

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318 update for tes compliance

318 update for tes compliance #1025

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: default 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b151883b2e0c06488c527e353081389d.nf` [small_stallman] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[2e/263fca] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[ac/1c53f1] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[e0/9d3b2b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[79/e528e9] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[ab/ff0cd1] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[5b/75f00e] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[79/3c0b22] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[e7/e1a97a] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[db/6b1bdc] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[09/72beba] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[3a/915186] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[dd/b477ca] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[21/66b3ad] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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