nf-core CI

Important! Template update for nf-core/tools v3.0.2 #1377

Triggered via pull request October 23, 2024 12:32

jfy133

synchronize #421

nf-core-template-merge-3.0.2

Status Failure

Total duration 31m 26s

Artifacts –

ci.yml

on: pull_request

Choose nextflow versions to test against depending on target branch

Matrix: test

Annotations

44 errors and 24 warnings

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

Process completed with exit code 2.

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

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Test pipeline: NFCORE_FUNCSCAN.test_preannotated_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 24 of 28 assertions failed

Run pipeline with test data (latest-everything | test_preannotated | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_preannotated | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 18 of 22 assertions failed

Run pipeline with test data (latest-everything | test | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_prokka_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 19 of 22 assertions failed

Run pipeline with test data (latest-everything | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_prokka_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 19 of 22 assertions failed

Run pipeline with test data (24.04.2 | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 24 of 28 assertions failed

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 19 of 22 assertions failed

Run pipeline with test data (24.04.2 | test | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_bakta: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_bakta: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bakta_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 19 of 22 assertions failed

Run pipeline with test data (24.04.2 | test_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bakta_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 19 of 22 assertions failed

Run pipeline with test data (latest-everything | test_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Run pipeline with test data (24.04.2 | test_nothing | docker)

Run pipeline with test data (latest-everything | test_preannotated | docker)

Run pipeline with test data (latest-everything | test_nothing | docker)

Run pipeline with test data (latest-everything | test | docker)

Run pipeline with test data (latest-everything | test_prokka | docker)

Run pipeline with test data (24.04.2 | test_prokka | docker)

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Run pipeline with test data (24.04.2 | test | docker)

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

Run pipeline with test data (24.04.2 | test_bakta | docker)

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

Run pipeline with test data (latest-everything | test_bakta | docker)

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Important! Template update for nf-core/tools v3.0.2 #1377

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