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Fix pyrodigal channels, update ampcombi docs #896

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Fix pyrodigal channels, update ampcombi docs

Fix pyrodigal channels, update ampcombi docs #896

Run time

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Job Run time
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool bakta --annotatio...
1m 9s
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool prodigal)
54s
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool prokka)
52s
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool pyrodigal)
1m 10s
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool bakta -...
1m 10s
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool prodigal)
58s
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool prokka)
1m 10s
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool pyrodigal)
1m 8s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
2m 45s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
2m 44s
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
2m 43s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
2m 45s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
2m 43s
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
2m 42s
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prodigal)
2m 47s
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prokka)
2m 44s
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool bakta --annotatio...
2m 45s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prodigal)
2m 43s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prokka)
2m 46s
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool bakta -...
2m 44s
41m 22s