Skip to content
nf-core CI

Stop prokka from renaming contigs by default #910

Sign in to view logs

Stop prokka from renaming contigs by default

Stop prokka from renaming contigs by default #910

Re-run triggered August 22, 2023 14:04
@Darcy220606Darcy220606
#306
Darcy220606:rename_contigs_prokka
Status Failure
Total duration 47m 1s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with test data (AMP and ARG workflows)
Matrix: Run pipeline with test data (BGC workflow)
Fit to window
Zoom out
Zoom in

Annotations

4 errors and 6 warnings
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
Process completed with exit code 1.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/