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Fix deepARG test profile and use more stable deepARG db URL #914

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Fix deepARG test profile and use more stable deepARG db URL

Fix deepARG test profile and use more stable deepARG db URL #914

Triggered via pull request August 25, 2023 07:02
@jfy133jfy133
synchronize #307
stablish-deeparg
Status Cancelled
Total duration 14m 27s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with test data (AMP and ARG workflows)
Matrix: Run pipeline with test data (BGC workflow)
Matrix: Run pipeline with test data (DeepARG only workflow)
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18 errors and 10 warnings
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool pyrodigal)
Process completed with exit code 2.
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool pyrodigal)
Process completed with exit code 2.
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool bakta -...
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool bakta --annotatio...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prodigal)
Canceling since a higher priority waiting request for 'nf-core CI-307' exists
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool bakta --annotatio...
Canceling since a higher priority waiting request for 'nf-core CI-307' exists
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool bakta --annotatio...
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool bakta -...
Canceling since a higher priority waiting request for 'nf-core CI-307' exists
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool bakta -...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prodigal)
Canceling since a higher priority waiting request for 'nf-core CI-307' exists
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool pyrodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool pyrodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool bakta -...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool bakta --annotatio...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/