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Stop prokka from renaming contigs by default #920

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Stop prokka from renaming contigs by default

Stop prokka from renaming contigs by default #920

Triggered via pull request August 30, 2023 13:23
@Darcy220606Darcy220606
synchronize #306
Darcy220606:rename_contigs_prokka
Status Cancelled
Total duration 1m 21s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with test data (AMP and ARG workflows)
Matrix: Run pipeline with test data (BGC workflow)
Matrix: Run pipeline with test data (DeepARG only workflow)
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22 errors and 10 warnings
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool bakta -...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prodigal)
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prokka)
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool bakta --annotatio...
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (23.04.0, --annotation_tool bakta --annotatio...
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool pyrodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prokka)
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool pyrodigal)
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool bakta --annotatio...
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool bakta -...
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool bakta -...
The operation was canceled.
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prodigal)
Canceling since a higher priority waiting request for 'nf-core CI-306' exists
Run pipeline with test data (AMP and ARG workflows) (latest-everything, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
The operation was canceled.
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool bakta -...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool bakta --annotati...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool bakta --annotation_bakta_d...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool pyrodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (23.04.0, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (latest-everything, --annotation_tool pyrodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (DeepARG only workflow) (23.04.0, --annotation_tool bakta --annotatio...
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prokka)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (BGC workflow) (latest-everything, --annotation_tool prodigal)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/