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Release PR for 1.1.3 #303

Merged
merged 63 commits into from
Aug 11, 2023
Merged

Release PR for 1.1.3 #303

merged 63 commits into from
Aug 11, 2023

Commits on May 31, 2023

  1. test nf-core validation

    @louperelo
    louperelo committed May 31, 2023
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  2. update parameter name

    @louperelo
    louperelo committed May 31, 2023
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  3. fix input file in schema

    @louperelo
    louperelo committed May 31, 2023
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Commits on Jun 30, 2023

  1. Template update for nf-core/tools version 2.9

    @nf-core-bot
    nf-core-bot committed Jun 30, 2023
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Commits on Jul 5, 2023

  1. Merge branch 'dev' into nf-core-template-merge-2.9

    @jfy133
    jfy133 authored Jul 5, 2023
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  2. Set fasta existance check to false

    @jfy133
    jfy133 authored Jul 5, 2023
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  3. Update nxf versions across all CI tests

    @jfy133
    jfy133 authored Jul 5, 2023
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Commits on Jul 12, 2023

  1. Apply suggestions from code review

    @jfy133
    jfy133 authored Jul 12, 2023
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  2. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jul 12, 2023
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  3. Add hamronization DOI + version bump

    @jasmezz
    jasmezz committed Jul 12, 2023
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  4. Add a couple of missing citations and add full methods tesxt

    @jfy133
    jfy133 committed Jul 12, 2023
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  5. Merge branch 'nf-core-template-merge-2.9' of github.com:nf-core/funcs… 

    …can into nf-core-template-merge-2.9
    @jfy133
    jfy133 committed Jul 12, 2023
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  6. Update CITATIONS.md 

    Co-authored-by: Jasmin Frangenberg <[email protected]>
    @jfy133 @jasmezz
    jfy133 and jasmezz authored Jul 12, 2023
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  7. Merge pull request #290 from nf-core/nf-core-template-merge-2.9 

    Important! Template update for nf-core/tools v2.9
    @jfy133
    jfy133 authored Jul 12, 2023
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  8. Merge branch 'dev' into hamronization_doi

    @jasmezz
    jasmezz committed Jul 12, 2023
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  9. Update changelog

    @jasmezz
    jasmezz committed Jul 12, 2023
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  10. Remove duplicate hamronization reference

    @jasmezz
    jasmezz authored Jul 12, 2023
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Commits on Jul 13, 2023

  1. Merge pull request #294 from nf-core/hamronization_doi 

    Version bump + changelog update
    @jfy133
    jfy133 authored Jul 13, 2023
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  2. add Prokka to MultiQC

    @louperelo
    louperelo committed Jul 13, 2023
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Commits on Jul 14, 2023

  1. Updated prodigal output filename pattern

    @jasmezz
    jasmezz committed Jul 14, 2023
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  2. Update changelog

    @jasmezz
    jasmezz committed Jul 14, 2023
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  3. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jul 14, 2023
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  4. update changelog

    @louperelo
    louperelo committed Jul 14, 2023
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  5. Merge branch 'dev' into prokka_mqc

    @louperelo
    louperelo authored Jul 14, 2023
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  6. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Jul 14, 2023
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Commits on Jul 19, 2023

  1. Filter out annotation files that are empty to prevent failures during… 

    … screening
    @jfy133
    jfy133 committed Jul 19, 2023
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  2. Apply suggestions from code review

    @jfy133
    jfy133 authored Jul 19, 2023
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  3. Add test nothing

    @jfy133
    jfy133 committed Jul 19, 2023
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  4. Merge branch 'dev' into validation

    @jfy133
    jfy133 committed Jul 19, 2023
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  5. Fix schema

    @jfy133
    jfy133 committed Jul 19, 2023
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  6. Apply suggestions from code review 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @louperelo @jfy133
    louperelo and jfy133 authored Jul 19, 2023
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  7. Fix tests

    @jfy133
    jfy133 committed Jul 19, 2023
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  8. Update CHANGELOG

    @jfy133
    jfy133 committed Jul 19, 2023
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  9. Re-add external deps for template linting

    @jfy133
    jfy133 committed Jul 19, 2023
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  10. Apply suggestions from code review

    @jfy133
    jfy133 authored Jul 19, 2023
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  11. Tweak error message

    @jfy133
    jfy133 committed Jul 19, 2023
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  12. Merge branch 'start-qc' of github.com:nf-core/funcscan into start-qc

    @jfy133
    jfy133 committed Jul 19, 2023
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  13. Merge pull request #295 from louperelo/prokka_mqc 

    add Prokka to MultiQC
    @louperelo
    louperelo authored Jul 19, 2023
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  14. Apply suggestions from code review

    @louperelo
    louperelo authored Jul 19, 2023
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  15. Update CHANGELOG.md

    @jfy133
    jfy133 authored Jul 19, 2023
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  16. Merge pull request #285 from nf-core/validation 

    adding nf-core/validation
    @jfy133
    jfy133 authored Jul 19, 2023
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Commits on Jul 20, 2023

  1. Merge branch 'dev' into start-qc

    @jfy133
    jfy133 authored Jul 20, 2023
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  2. Merge pull request #296 from nf-core/fix_prodigal_save_annotations 

    Update prodigal output filename pattern
    @jasmezz
    jasmezz authored Jul 20, 2023
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  3. Merge pull request #297 from nf-core/start-qc 

    Add QC check for empty files out of annotation
    @jfy133
    jfy133 authored Jul 20, 2023
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Commits on Jul 28, 2023

  1. Pull updated modules, adjust comBGC

    @jasmezz
    jasmezz committed Jul 28, 2023
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  2. Update changelog

    @jasmezz
    jasmezz committed Jul 28, 2023
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Commits on Aug 2, 2023

  1. Update changelog

    @jasmezz
    jasmezz committed Aug 2, 2023
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  2. Update CHANGELOG.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @jasmezz @jfy133
    jasmezz and jfy133 authored Aug 2, 2023
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  3. Merge pull request #299 from nf-core/modules-update 

    Modules update incl. fixing pigz in Pyrodigal
    @jasmezz
    jasmezz authored Aug 2, 2023
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Commits on Aug 4, 2023

  1. Fix pyrodigal channels, update ampcombi docs

    @jasmezz
    jasmezz committed Aug 4, 2023
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  2. Update changelog

    @jasmezz
    jasmezz committed Aug 4, 2023
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  3. Update changelog

    @jasmezz
    jasmezz committed Aug 4, 2023
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  4. Merge pull request #300 from nf-core/fix_antismash_ampcombi 

    Fix pyrodigal channels, update ampcombi docs
    @jasmezz
    jasmezz authored Aug 4, 2023
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Commits on Aug 7, 2023

  1. Release version bump

    @jasmezz
    jasmezz committed Aug 7, 2023
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  2. Switch off deeparg ci tests

    @jasmezz
    jasmezz committed Aug 7, 2023
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Commits on Aug 8, 2023

  1. Small updates to schema JSON to remove false and "None" defaults.

    @robsyme
    robsyme committed Aug 8, 2023
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Commits on Aug 9, 2023

  1. Update CHANGELOG.md [skip ci]

    @jasmezz
    jasmezz authored Aug 9, 2023
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  2. Merge pull request #302 from nf-core/remove-none-from-schema 

    Small updates to schema JSON to remove false and "None" defaults.
    @jasmezz
    jasmezz authored Aug 9, 2023
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  3. Merge branch 'dev' into release-version-bump

    @jasmezz
    jasmezz committed Aug 9, 2023
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  4. Update changelog [skip ci]

    @jasmezz
    jasmezz committed Aug 9, 2023
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  5. Merge pull request #301 from nf-core/release-version-bump 

    Release version bump 1.1.3
    @jasmezz
    jasmezz authored Aug 9, 2023
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Commits on Aug 11, 2023

  1. Apply suggestions from code review

    @jasmezz
    jasmezz committed Aug 11, 2023
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  2. Add correct date in changelog [skip ci]

    @jasmezz
    jasmezz committed Aug 11, 2023
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