Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITE (sample_2)'

Caused by:
  Process `NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITE (sample_2)` terminated with an error exit status (125)

Command executed:

  ## We specifically do not include on-the-fly annotations (--genefinding-tool none) as
  ## this should be run as a separate module for versioning purposes
  
  antismash \
      --allow-long-headers --minlength 3000 --hmmdetection-strictness relaxed --taxon bacteria \
       \
      -c 2 \
      --output-dir sample_2 \
      --output-basename sample_2 \
      --genefinding-tool none \
      --logfile sample_2/sample_2.log \
      --databases databases \
      sample_2_pyrodigal.gbk
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITE":
      antismash-lite: $(echo $(antismash --version) | sed 's/antiSMASH //')
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0' locally
  7.1.0--pyhdfd78af_0: Pulling from biocontainers/antismash-lite
  ca7680d1025d: Already exists
  bd9ddc54bea9: Already exists
  86d817383afc: Pulling fs layer
  86d817383afc: Verifying Checksum
  86d817383afc: Download complete
  86d817383afc: Pull complete
  Digest: sha256:f5164b3127313d5f35829c9875f04ff3b26ebabd029b5205e4e86c9ba4c89af2
  Status: Downloaded newer image for quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0
  docker: Error response from daemon: error while creating mount source path 'antismash': mkdir antismash: file exists.

Work dir:
  /home/runner/work/funcscan/funcscan/.nf-test/tests/2477b7bee34e2ea73b7b824b229ab27d/work/8c/8dcfcae4423b5b66cdd3ac62d93c82

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/2477b7bee34e2ea73b7b824b229ab27d/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/2477b7bee34e2ea73b7b824b229ab27d/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.04.4 is available - Please consider updating your version to it