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Merge pull request #416 from nf-core/post-release-bump #1370

Merge pull request #416 from nf-core/post-release-bump

Merge pull request #416 from nf-core/post-release-bump #1370

GitHub Actions / JUnit Test Report failed Sep 6, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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test_bgc_bakta_profile

Assertion failed: 

8 of 14 assertions failed
Raw output
Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES'

Caused by:
  Process exceeded running time limit (1h)

Command executed:

  download-antismash-databases \
      --database-dir antismash_db \
  
  
  cp -r /usr/local/lib/python3.10/site-packages/antismash antismash_dir;
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES":
      antismash-lite: $(antismash --version | sed 's/antiSMASH //')
  END_VERSIONS

Command exit status:
  -

Command output:
  Downloading clusterblast_4.0.tar.xz: 66.22% downloaded.
  Downloading clusterblast_4.0.tar.xz: 66.24% downloaded.
  Downloading clusterblast_4.0.tar.xz: 66.26% downloaded.
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  Downloading clusterblast_4.0.tar.xz: 67.08% downloaded.

Command error:
  Unable to find image 'quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0' locally
  7.1.0--pyhdfd78af_0: Pulling from biocontainers/antismash-lite
  ca7680d1025d: Already exists
  bd9ddc54bea9: Already exists
  86d817383afc: Pulling fs layer
  86d817383afc: Verifying Checksum
  86d817383afc: Download complete
  86d817383afc: Pull complete
  Digest: sha256:f5164b3127313d5f35829c9875f04ff3b26ebabd029b5205e4e86c9ba4c89af2
  Status: Downloaded newer image for quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0
  Matplotlib created a temporary cache directory at /tmp/matplotlib-k1ysc0o6 because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.

Work dir:
  /home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/work/46/8f3376463ce6a94771fcd751645b8d

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.04.4 is available - Please consider updating your version to it