Merge pull request #416 from nf-core/post-release-bump #1370
GitHub Actions / JUnit Test Report
failed
Sep 6, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
Check failure on line 1 in test_bgc_bakta_profile
github-actions / JUnit Test Report
test_bgc_bakta_profile
Assertion failed:
8 of 14 assertions failed
Raw output
Nextflow stdout:
ERROR ~ Error executing process > 'NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES'
Caused by:
Process exceeded running time limit (1h)
Command executed:
download-antismash-databases \
--database-dir antismash_db \
cp -r /usr/local/lib/python3.10/site-packages/antismash antismash_dir;
cat <<-END_VERSIONS > versions.yml
"NFCORE_FUNCSCAN:FUNCSCAN:BGC:ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES":
antismash-lite: $(antismash --version | sed 's/antiSMASH //')
END_VERSIONS
Command exit status:
-
Command output:
Downloading clusterblast_4.0.tar.xz: 66.22% downloaded.
Downloading clusterblast_4.0.tar.xz: 66.24% downloaded.
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Command error:
Unable to find image 'quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0' locally
7.1.0--pyhdfd78af_0: Pulling from biocontainers/antismash-lite
ca7680d1025d: Already exists
bd9ddc54bea9: Already exists
86d817383afc: Pulling fs layer
86d817383afc: Verifying Checksum
86d817383afc: Download complete
86d817383afc: Pull complete
Digest: sha256:f5164b3127313d5f35829c9875f04ff3b26ebabd029b5205e4e86c9ba4c89af2
Status: Downloaded newer image for quay.io/biocontainers/antismash-lite:7.1.0--pyhdfd78af_0
Matplotlib created a temporary cache directory at /tmp/matplotlib-k1ysc0o6 because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Work dir:
/home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/work/46/8f3376463ce6a94771fcd751645b8d
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/384f6011c44b4f6bd2ef408c3df46ab6/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
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