nf-core linting

Important! Template update for nf-core/tools v3.0.2 #1617

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GitHub Actions / JUnit Test Report failed Oct 23, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in Test pipeline: NFCORE_FUNCSCAN

github-actions / JUnit Test Report

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_profile

Assertion failed: 

25 of 28 assertions failed

Raw output


            Nextflow stdout:

ERROR ~ Module compilation error
- file : /home/runner/work/funcscan/funcscan/./workflows/../subworkflows/local/utils_nfcore_funcscan_pipeline/main.nf
- cause: Unexpected character: '"' @ line 215, column 35.
       ].join(' ').trim().replaceAll(", \.", ".")
                                     ^

1 error


 -- Check script '/home/runner/work/funcscan/funcscan/./workflows/funcscan.nf' at line: 11 or see '/home/runner/work/funcscan/funcscan/.nf-test/tests/1f6a72c94a9e6a86afed0ba5b15fed82/meta/nextflow.log' file for more details
Nextflow stderr:

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