Patch: 3.2.1 #1842
jfy133ci.yml
on: pull_request
Run single test to checkm due to database download
34s
Matrix: Run workflow profile
Matrix: test
Annotations
24 errors and 2 warnings
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Run pipeline with test data (latest-everything | test | conda)
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Run pipeline with test data (latest-everything | test | conda)
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Run workflow profile (test_virus_identification)
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Run workflow profile (test_virus_identification)
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Run pipeline with test data (24.04.2 | test | conda)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run pipeline with test data (24.04.2 | test | conda)
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Run workflow profile (test_hybrid_host_rm)
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Run workflow profile (test_hybrid_host_rm)
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Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run pipeline with test data (latest-everything | test | singularity)
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Run workflow profile (test_single_end)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run workflow profile (test_single_end)
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Run workflow profile (test_ancient_dna)
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Run workflow profile (test_concoct)
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Run workflow profile (test_host_rm)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run workflow profile (test_hybrid)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run single test to checkm due to database download
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run workflow profile (test_busco_auto)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run workflow profile (test_binrefinement)
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Run workflow profile (test_adapterremoval)
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Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-710' exists
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Run pipeline with test data (24.04.2 | test | singularity)
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Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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