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Patch: 3.2.1 #710

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merged 8 commits into from
Oct 30, 2024
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Patch: 3.2.1 #710

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5fbdda4
Post 3.2.0 release version bump
jfy133 Oct 27, 2024
6624f88
Merge pull request #706 from nf-core/post-release-v-bump
jfy133 Oct 27, 2024
0149ed2
Prepare for patch
jfy133 Oct 29, 2024
2291974
Update CHANGELOG
jfy133 Oct 29, 2024
dbe49fe
Add sapces to MEGAHIT options to stop breaking args list
jfy133 Oct 29, 2024
4c43894
Update .nf-core.yml
jfy133 Oct 29, 2024
52ccb1c
Update modules.config
jfy133 Oct 29, 2024
daa493f
Apply suggestions from code review
jfy133 Oct 30, 2024
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2 changes: 1 addition & 1 deletion .nf-core.yml
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Expand Up @@ -18,5 +18,5 @@ template:
org: nf-core
outdir: .
skip_features: null
version: 3.2.0
version: 3.0.1
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update: null
14 changes: 14 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,20 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## 3.2.1 [2024-10-29]
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### `Added`

### `Changed`

### `Fixed`

- [#707](https://github.com/nf-core/mag/pull/674) - Fix missing space resulting in malformed args for MEGAHIT (reported by @d4straub, fix by @jfy133)

### `Dependencies`

### `Deprecated`

## 3.2.0 [2024-10-27]

### `Added`
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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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@@ -1,7 +1,7 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/mag/releases/tag/3.2.0" target="_blank">nf-core/mag</a>
This report has been generated by the <a href="https://github.com/nf-core/mag/releases/tag/3.2.1" target="_blank">nf-core/mag</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/mag/3.2.0/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/mag/3.2.1/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-mag-methods-description":
order: -1000
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2 changes: 1 addition & 1 deletion conf/modules.config
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Expand Up @@ -257,7 +257,7 @@ process {
}

withName: MEGAHIT {
ext.args = { params.megahit_options ? params.megahit_options + "-m ${task.memory.toBytes()}" : "-m ${task.memory.toBytes()}" }
ext.args = { params.megahit_options ? params.megahit_options + " -m ${task.memory.toBytes()}" : " -m ${task.memory.toBytes()}" }
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ext.prefix = { "MEGAHIT-${meta.id}" }
publishDir = [path: { "${params.outdir}/Assembly/MEGAHIT" }, mode: params.publish_dir_mode, pattern: "*.{fa.gz,log}"]
}
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -375,7 +375,7 @@ manifest {
description = """Assembly, binning and annotation of metagenomes"""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.2'
version = '3.2.0'
version = '3.2.1'
doi = '10.1093/nargab/lqac007'
}

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