parabricks/applybqsr version updated and tests migrated to nf-test #16527
Triggered via pull request
October 30, 2024 11:51
famosab
Status
Cancelled
Total duration
10m 4s
Artifacts
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test.yml
on: pull_request
Matrix: nf-test
Waiting for pending jobs
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
2s
Annotations
7 errors and 2 warnings
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nf-core-lint-modules (parabricks/applybqsr)
Process completed with exit code 1.
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confirm-pass
Process completed with exit code 1.
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nf-test (modules/nf-core/parabricks/applybqsr, conda)
Canceling since a higher priority waiting request for 'Run tests-6881' exists
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nf-test (modules/nf-core/parabricks/applybqsr, singularity)
Canceling since a higher priority waiting request for 'Run tests-6881' exists
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nf-test (modules/nf-core/parabricks/applybqsr, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-6881' exists
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nf-test (modules/nf-core/parabricks/applybqsr, docker_self_hosted)
The operation was canceled.
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Run tests
Error when evaluating 'strategy' for job 'nf-test'. .github/workflows/test.yml (Line: 664, Col: 13): Matrix exclude key 'tags' does not match any key within the matrix
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pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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