Fix minor typos #19970
SPPearceAnnotations
91 errors and 2 warnings
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pytest (bbmap/align, docker)
Process completed with exit code 1.
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pytest (bbmap/align, docker)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, docker)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, docker)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, docker)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, docker)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (graphtyper/genotype, docker)
Process completed with exit code 1.
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pytest (graphtyper/genotype, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (graphtyper/genotype, docker)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, conda)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, conda)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, docker)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (mmseqs/easysearch, docker)
Process completed with exit code 1.
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pytest (cooler/balance, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (cooler/balance, conda)
Process completed with exit code 1.
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pytest (cooler/balance, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, singularity)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, singularity)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (hmmer/eslreformat, singularity)
Process completed with exit code 1.
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pytest (hmmer/eslreformat, singularity)
Process completed with exit code 1.
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pytest (graphtyper/genotype, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (graphtyper/genotype, singularity)
Process completed with exit code 1.
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pytest (graphtyper/genotype, singularity)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_cnv_wisecondorx, docker)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, docker)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, docker)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/vcf_annotate_ensemblvep, docker)
Process completed with exit code 1.
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pytest (duphold, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (duphold, conda)
Process completed with exit code 1.
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pytest (duphold, conda)
Process completed with exit code 1.
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pytest (bbmap/align, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (bbmap/align, conda)
Process completed with exit code 1.
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pytest (bbmap/align, conda)
Process completed with exit code 1.
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pytest (msisensor/msi, conda)
Process completed with exit code 1.
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pytest (msisensor/msi, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (msisensor/msi, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/fastq_align_bwaaln, singularity)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, singularity)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, conda)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, conda)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_create_umi_consensus_fgbio, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (sgdemux, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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pytest (sgdemux, conda)
The operation was canceled.
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pytest (graphtyper/genotype, conda)
Process completed with exit code 1.
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pytest (graphtyper/genotype, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (graphtyper/genotype, conda)
Process completed with exit code 1.
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pytest (bbmap/align, singularity)
Process completed with exit code 1.
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pytest (bbmap/align, singularity)
Process completed with exit code 1.
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pytest (bbmap/align, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, conda)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, conda)
The operation was canceled.
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pytest (mmseqs/easysearch, singularity)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, singularity)
Process completed with exit code 1.
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pytest (mmseqs/easysearch, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/fastq_align_bwaaln, docker)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, docker)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_cnv_wisecondorx, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_cnv_wisecondorx, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_cnv_wisecondorx, singularity)
Process completed with exit code 1.
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pytest (subworkflows/bam_cnv_wisecondorx, singularity)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, singularity)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, singularity)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/fastq_align_bwaaln, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, conda)
Process completed with exit code 1.
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pytest (subworkflows/fastq_align_bwaaln, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (universc, docker)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
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pytest (universc, docker)
The operation was canceled.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, singularity)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, singularity)
Process completed with exit code 1.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, singularity)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, conda)
Process completed with exit code 1.
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pytest (subworkflows/vcf_annotate_ensemblvep, conda)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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pytest (subworkflows/vcf_annotate_ensemblvep, conda)
Process completed with exit code 1.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, docker)
Process completed with exit code 1.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, docker)
Process completed with exit code 1.
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pytest (subworkflows/bam_tumor_only_somatic_variant_calling_gatk, docker)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
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confirm-pass
Process completed with exit code 1.
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pytest-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
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logs-conda-
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2.8 KB |
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logs-docker-
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62.5 KB |
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logs-singularity-
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2.03 KB |
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