[skip ci] Dev -> Master for 3.15.0 #2906

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Triggered via pull request September 4, 2024 09:29

synchronize #1258

dev

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subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04

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modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04

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modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/fastp/tests/main.nf.test docker NF-23.04

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modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything

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modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything

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modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything

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tests/kallisto.nf.test docker NF-23.04

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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tests/kallisto.nf.test docker NF-latest-everything

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/