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Slight fixes for rnaseq preprocessing #2937

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Slight fixes for rnaseq preprocessing

Slight fixes for rnaseq preprocessing #2937

Triggered via pull request September 16, 2024 11:35
@pinin4fjordspinin4fjords
synchronize #1382
rnaseq_propro_trimfail_fix
Status Cancelled
Total duration 6m 20s
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ci.yml

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40 errors and 4 warnings
tests/remove_ribo_rna.nf.test docker NF-latest-everything
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
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tests/skip_qc.nf.test docker NF-23.04
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tests/skip_qc.nf.test docker NF-23.04
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tests/featurecounts_group_type.nf.test docker NF-23.04
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tests/featurecounts_group_type.nf.test docker NF-23.04
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tests/kallisto.nf.test docker NF-latest-everything
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tests/kallisto.nf.test docker NF-latest-everything
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tests/star_rsem.nf.test docker NF-23.04
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tests/star_rsem.nf.test docker NF-23.04
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tests/hisat2.nf.test docker NF-latest-everything
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tests/hisat2.nf.test docker NF-latest-everything
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tests/star_rsem.nf.test docker NF-latest-everything
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tests/star_rsem.nf.test docker NF-latest-everything
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tests/kallisto.nf.test docker NF-23.04
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tests/kallisto.nf.test docker NF-23.04
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tests/default.nf.test docker NF-23.04
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tests/default.nf.test docker NF-23.04
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tests/skip_trimming.nf.test docker NF-23.04
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tests/skip_trimming.nf.test docker NF-23.04
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tests/skip_qc.nf.test docker NF-latest-everything
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tests/skip_qc.nf.test docker NF-latest-everything
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tests/salmon.nf.test docker NF-latest-everything
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tests/salmon.nf.test docker NF-latest-everything
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tests/hisat2.nf.test docker NF-23.04
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tests/hisat2.nf.test docker NF-23.04
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tests/remove_ribo_rna.nf.test docker NF-23.04
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tests/remove_ribo_rna.nf.test docker NF-23.04
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tests/default.nf.test docker NF-latest-everything
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tests/default.nf.test docker NF-latest-everything
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tests/min_mapped_reads.nf.test docker NF-latest-everything
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tests/min_mapped_reads.nf.test docker NF-latest-everything
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tests/salmon.nf.test docker NF-23.04
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tests/salmon.nf.test docker NF-23.04
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
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tests/min_mapped_reads.nf.test docker NF-23.04
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tests/min_mapped_reads.nf.test docker NF-23.04
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tests/skip_trimming.nf.test docker NF-latest-everything
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tests/skip_trimming.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/