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Add umicollapse as an alternative to umi-tools #3151

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Add umicollapse as an alternative to umi-tools

Add umicollapse as an alternative to umi-tools #3151

Run time

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Job Run time
Check for changes
31s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
1s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2)
2s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
1s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-24.04.2)
2s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)
3s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
1s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-24.04.2)
3s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
5s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)
2s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
1s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
4s
Run tests (tests/default.nf.test docker NF-24.04.2)
3s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
2s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
9s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
1s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)
2s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)
2s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
1s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-latest-everything)
1s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
6s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)
3s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
1s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
1s
Run tests (tests/default.nf.test docker NF-latest-everything)
1s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
1s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
1s
confirm-pass
1s
1m 36s