Merge branch 'arm_3.16.1' of github.com:nf-core/rnaseq into arm_3.16.1

nf-core · Oct 22, 2024 · 7448aed · 7448aed
2 parents 524e19e + cdfb98b
commit 7448aed
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/subworkflows/local/align_star/nextflow.config b/subworkflows/local/align_star/nextflow.config
@@ -36,11 +36,10 @@ if (!params.skip_alignment && params.aligner == 'star_salmon') {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeSAMoutput BanSingleEnd')
             }
         }
-        withName: 'ALIGN_STAR:STAR_ALIGN_IGENOMES' {
+        withName: '.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {
             ext.args   = {
                     generateStarAlignArgs(params.save_unaligned, params.contaminant_screening, params.extra_star_align_args + ' --quantTranscriptomeBan Singleend')
             }
-
         }
         withName: '.*:ALIGN_STAR:STAR_ALIGN|.*:ALIGN_STAR:STAR_ALIGN_IGENOMES' {