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26 Open 173 Closed
26 Open 173 Closed
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Issues list

Add nf-core bowtie2 build to smrnaseq
#434 opened Sep 19, 2024 by atrigila
@atrigila
Add nf-core bowtie1 build to smrnaseq
#433 opened Sep 19, 2024 by atrigila
@atrigila
Create nf-core mirdeep module
#431 opened Sep 17, 2024 by atrigila 2.4.0
1
@atrigila
The pipeline doesn't finish but is marked as completed bug Something isn't working
#415 opened Sep 9, 2024 by karlaarz
6
Possible bug in logic code related to mature, hairpin and species setup bug Something isn't working
#414 opened Sep 6, 2024 by lpantano
3
genome-wide smrna detection and quantification enhancement New feature or request
#409 opened Sep 6, 2024 by lpantano
2
Improve the contaminant filter
#406 opened Sep 5, 2024 by apeltzer
Addressing TODOs in pipeline, general cleanup of variables
#400 opened Aug 30, 2024 by nschcolnicov
Generate test profile for mirdeep subworkflow
#399 opened Aug 30, 2024 by nschcolnicov
Update Docs & Consistency checks enhancement New feature or request
#370 opened Aug 8, 2024 by apeltzer 2.4.0
1
Migrate local modules to nf-core/modules enhancement New feature or request
#368 opened Aug 8, 2024 by apeltzer 2.4.0
2
Improve pipeline tests for different protocols enhancement New feature or request
#366 opened Jul 30, 2024 by apeltzer 2.4.0
@atrigila @nschcolnicov
8
mirs ID enhancement New feature or request
#357 opened Jun 24, 2024 by TarekGharsalli
2
bowtie parameters customization enhancement New feature or request
#356 opened Jun 19, 2024 by Cristinex
Running Genome Quantification question Further information is requested
#355 opened Jun 14, 2024 by NicolasMorando
1
INDEX_GENOME: Bowtie build error bug Something isn't working
#340 opened Apr 8, 2024 by AhmedMohamed1993 2.4.0
4
--mirna_gtf for organism with no miRBase GFF file bug Something isn't working
#329 opened Mar 21, 2024 by OliverH96
3
merging fastq unnecessarily bug Something isn't working
#268 opened Aug 22, 2023 by bounlu 2.4.0
1
Add database version to software_versions enhancement New feature or request
#266 opened Aug 11, 2023 by WackerO
2
Problems in reading fastq file
#249 opened May 17, 2023 by PrimettaFaccioli
5
Create consensus bed of mirdeep2 miRNAs enhancement New feature or request
#176 opened Aug 29, 2022 by JoseEspinosa
1
Remove Duplicates in mirtop.tsv removes more lines than expected bug Something isn't working help wanted Extra attention is needed question Further information is requested
#174 opened Jul 22, 2022 by DwinGrashof 2.4.0
@lpantano @atrigila
4
Inconsistencies in hairpins aligned read numbers documentation enhancement New feature or request
#94 opened Jul 7, 2021 by cguyomar
4 tasks done
2.4.0
@nschcolnicov
6
Make sample name cleaning regex configurable bug Something isn't working enhancement New feature or request
#64 opened Feb 10, 2021 by ewels 2.4.0
Problems with miRTrace output
#44 opened Mar 18, 2020 by lcabus-flomics 2.4.0
4
ProTip! Exclude everything labeled bug with -label:bug.