In this repository you can find scripts useful for plotting and other R related functions.
Plot_genes_gff_file.Rscript
Plot genes in given region baseed on gff file
Window_average.Rscript. By this script you can create average values of stats (Fst/allele frequency/....) in non-overlapping window. It can loop through your dataframe consisting of chromosome numbers/IDs and create a final dataframe.