Component List v1.3.9

This page summarizes the packaged components available in the OpenHPC repository. These components are organized by groupings based on their general functionality, and links point to where additional information can be obtained for each component. Note that many of the 3rd party community libraries that are pre-packaged with OpenHPC are built using multiple compiler and MPI families. In these cases, the underlying RPM package names include delimiters identifying the development environment for which each package build is targeted.

Administrative Tools:

• clustershell http://clustershell.sourceforge.net
• conman http://dun.github.io/conman
• docs https://github.com/openhpc/ohpc
• examples https://github.com/openhpc/ohpc
• ganglia http://ganglia.sourceforge.net
• genders https://github.com/chaos/genders
• lmod-defaults https://github.com/openhpc/ohpc
• lmod https://github.com/TACC/Lmod
• losf https://github.com/hpcsi/losf
• mrsh https://github.com/chaos/mrsh
• nagios http://www.nagios.org
• nagios-plugins https://www.nagios-plugins.org
• ndoutils http://www.nagios.org/download/addons
• nhc https://github.com/mej/nhc
• nrpe http://www.nagios.org
• pdsh https://github.com/chaos/pdsh
• prun https://github.com/openhpc/ohpc
• test-suite https://github.com/openhpc/ohpc/tests

Compiler Families:

• Gnu Compiler Suite http://gcc.gnu.org
• Intel Compiler Compatibility Package https://github.com/openhpc/ohpc
• LLVM Compiler Suite http://www.llvm.org

Development Tools:

• EasyBuild http://easybuilders.github.io/easybuild
• autoconf http://www.gnu.org/software/autoconf
• automake http://www.gnu.org/software/automake
• cmake https://cmake.org
• hwloc http://www.open-mpi.org/projects/hwloc
• libtool http://www.gnu.org/software/libtool
• python-mpi4py https://bitbucket.org/mpi4py/mpi4py
• python-numpy http://sourceforge.net/projects/numpy
• python-scipy http://www.scipy.org
• python3-mpi4py https://bitbucket.org/mpi4py/mpi4py
• python3-numpy https://github.com/numpy/numpy
• spack https://github.com/LLNL/spack
• valgrind http://www.valgrind.org

Updates of Distro-provided packages:

• lua-bit http://bitop.luajit.org
• lua-filesystem http://keplerproject.github.com/luafilesystem
• lua-posix https://github.com/luaposix/luaposix

IO Libraries:

• adios http://www.olcf.ornl.gov/center-projects/adios
• hdf5 http://www.hdfgroup.org/HDF5
• netcdf-cxx http://www.unidata.ucar.edu/software/netcdf
• netcdf-fortran http://www.unidata.ucar.edu/software/netcdf
• netcdf http://www.unidata.ucar.edu/software/netcdf
• phdf5 http://www.hdfgroup.org/HDF5
• pnetcdf http://cucis.ece.northwestern.edu/projects/PnetCDF
• sionlib http://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html

Lustre packages:

• lustre-client https://wiki.whamcloud.com
• shine http://lustre-shine.sourceforge.net

MPI Runtime Families:

• Intel MPI Compatibility Package https://github.com/openhpc/ohpc
• mpich http://www.mpich.org
• mvapich2 http://mvapich.cse.ohio-state.edu/overview/mvapich2
• openmpi http://www.open-mpi.org

Parallel Libraries:

• boost http://www.boost.org
• fftw http://www.fftw.org
• hypre http://www.llnl.gov/casc/hypre
• mfem http://mfem.org
• mumps http://mumps.enseeiht.fr
• opencoarrays http://www.opencoarrays.org
• petsc http://www.mcs.anl.gov/petsc
• scotch http://www.labri.fr/perso/pelegrin/scotch
• scalapack http://www.netlib.org/lapack-dev
• slepc http://slepc.upv.es
• superlu_dist http://crd-legacy.lbl.gov/~xiaoye/SuperLU
• trilinos http://trilinos.sandia.gov/index.html

Performance Tools:

• dimemas https://tools.bsc.es
• extrae https://tools.bsc.es
• geopm https://geopm.github.io
• imb https://software.intel.com/en-us/articles/intel-mpi-benchmarks
• likwid https://github.com/RRZE-HPC/likwid
• mpiP http://mpip.sourceforge.net
• msr-safe https://github.com/LLNL/msr-safe
• omb http://mvapich.cse.ohio-state.edu/benchmarks
• papi http://icl.cs.utk.edu/papi
• paraver https://tools.bsc.es
• pdtoolkit http://www.cs.uoregon.edu/Research/pdt
• scalasca http://www.scalasca.org
• scorep http://www.vi-hps.org/projects/score-p
• tau http://www.cs.uoregon.edu/research/tau/home.php

Provisioning Tools:

• warewulf http://warewulf.lbl.gov

Resource Management:

• munge http://dun.github.io/munge
• PBSPro https://github.com/PBSPro/pbspro
• pmix https://pmix.github.io/pmix
• slurm https://slurm.schedmd.com

Runtimes:

• charliecloud https://hpc.github.io/charliecloud
• ocr https://xstack.exascale-tech.com/wiki
• singularity https://www.sylabs.io/singularity

Serial / Threaded Libraries:

• R http://www.r-project.org
• gsl http://www.gnu.org/software/gsl
• metis http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
• openblas http://www.openblas.net
• plasma https://bitbucket.org/icl/plasma
• superlu http://crd.lbl.gov/~xiaoye/SuperLU