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@leeoesterreich Lee Oesterreich Lab

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    19 repositories

    • ILC-Immune-Infiltration

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • ERpBRCA_OlderWomen

      Public
      Chronic inflammation and hormone disposition promote a tumor-permissive locale for breast cancer in older women
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • RatAgingWES

      Public
      Github repository for code used to analyze whole exome sequencing data from older and younger rat tumors.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • BRCA_Rat_YoungerOlder_snRNAseq

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • BRCA_OlderWomen_BulkRNAseq

      Public
      Bulk RNA-seq data analysis to run GSVA and PROGENy
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • Structural-Variant-analysis

      Public
      Shell
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • mDLC_Spatial_Analysis_2023

      Public
      Spatial molecular profiling of mixed invasive ductal-lobular breast cancers reveals heterogeneity in intrinsic molecular subtypes, oncogenic signatures, and mutations
      HTML
      •1•0•0•0•Updated Jul 5, 2024Jul 5, 2024

    • GEXPLORER

      Public
      MIT License
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • DRGEXCOBRA

      Public
      DNA repair gene expression correlation with TFAP2B in BRCA data
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

    • ILC-Survey

      Public
      ILC Survey Text Analysis
      Jupyter Notebook
      •0•0•0•0•Updated Jan 5, 2024Jan 5, 2024

    • cfDNA-ULP_WGS

      Public
      This is for the project of ultra-low-pass whole genome sequencing of cfDNA
      Shell
      •1•0•0•0•Updated Mar 5, 2021Mar 5, 2021

    • scRNA-CellLines

      Public
      single cell RNA sequencing of 8 breast cancer cell lines
      Jupyter Notebook
      •4•7•0•0•Updated Nov 7, 2020Nov 7, 2020

    • shiny-server

      Public
      R
      •2•0•0•0•Updated Oct 30, 2020Oct 30, 2020

    • Tendo_cfDNA_Fusion_capture

      Public
      0•0•0•0•Updated Jun 26, 2020Jun 26, 2020

    • THU-Bell

      Public
      THU Bell on macOS
      Swift
      •5•0•0•0•Updated Feb 18, 2020Feb 18, 2020

    • npjBreast_2019

      Public
      FGFR4 overexpression and hotspot mutations in metastatic ER+ breast cancer are enriched in the lobular subtype
      Roff
      •0•0•0•0•Updated Jun 17, 2019Jun 17, 2019

    • jnci_2018

      Public
      Recurrent gains in RET and HER2 signaling represent clinically actionable targets in breast cancer brain metastases
      MIT License
      •2•0•0•0•Updated May 17, 2018May 17, 2018

    • jciInsight_2017

      Public
      Exome-capture RNA-sequencing of decade-old breast cancers and matched decalcified bone metastases, doi: 10.1172/jci.insight.95703
      R
      •
      MIT License
      •3•0•0•0•Updated May 17, 2018May 17, 2018

    • jamaOncology_2016

      Public
      Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab
      R
      •
      MIT License
      •4•1•0•0•Updated Dec 19, 2016Dec 19, 2016