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@leeoesterreich

Lee Oesterreich Lab

Lee Oesterreich Lab at University of Pittsburgh

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  1. cfDNA-ULP_WGS cfDNA-ULP_WGS Public

    This is for the project of ultra-low-pass whole genome sequencing of cfDNA

    Shell 1

  2. scRNA-CellLines scRNA-CellLines Public

    single cell RNA sequencing of 8 breast cancer cell lines

    Jupyter Notebook 7 4

  3. jamaOncology_2016 jamaOncology_2016 Public

    Forked from npriedig/jamaOncology_2016

    Reproduce figures from doi:10.1001/jamaoncol.2016.5630, Intrinsic Subtype Switching and Acquired ERBB2/HER2 Amplifications and Mutations in Breast Cancer Brain Metastases, Adrian Lee Lab

    R 1

  4. jciInsight_2017 jciInsight_2017 Public

    Forked from npriedig/jciInsight_2017

    Exome-capture RNA-sequencing of decade-old breast cancers and matched decalcified bone metastases, doi: 10.1172/jci.insight.95703

    R

  5. jnci_2018 jnci_2018 Public

    Forked from npriedig/jnci_2018

    Recurrent gains in RET and HER2 signaling represent clinically actionable targets in breast cancer brain metastases

  6. npjBreast_2019 npjBreast_2019 Public

    FGFR4 overexpression and hotspot mutations in metastatic ER+ breast cancer are enriched in the lobular subtype

    Roff

Repositories

Showing 10 of 19 repositories
  • leeoesterreich/ILC-Immune-Infiltration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 31, 2024
  • ERpBRCA_OlderWomen Public

    Chronic inflammation and hormone disposition promote a tumor-permissive locale for breast cancer in older women

    leeoesterreich/ERpBRCA_OlderWomen’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 17, 2024
  • RatAgingWES Public

    Github repository for code used to analyze whole exome sequencing data from older and younger rat tumors.

    leeoesterreich/RatAgingWES’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 16, 2024
  • leeoesterreich/BRCA_Rat_YoungerOlder_snRNAseq’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 16, 2024
  • BRCA_OlderWomen_BulkRNAseq Public

    Bulk RNA-seq data analysis to run GSVA and PROGENy

    leeoesterreich/BRCA_OlderWomen_BulkRNAseq’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 16, 2024
  • leeoesterreich/Structural-Variant-analysis’s past year of commit activity
    Shell 0 0 0 0 Updated Jul 8, 2024
  • mDLC_Spatial_Analysis_2023 Public Forked from osamashiraz/mDLC_Spatial_Analysis_2023

    Spatial molecular profiling of mixed invasive ductal-lobular breast cancers reveals heterogeneity in intrinsic molecular subtypes, oncogenic signatures, and mutations

    leeoesterreich/mDLC_Spatial_Analysis_2023’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 5, 2024
  • leeoesterreich/GEXPLORER’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 19, 2024
  • DRGEXCOBRA Public

    DNA repair gene expression correlation with TFAP2B in BRCA data

    leeoesterreich/DRGEXCOBRA’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jan 23, 2024
  • ILC-Survey Public

    ILC Survey Text Analysis

    leeoesterreich/ILC-Survey’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 5, 2024

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